Variant report

Variant	rs139404472
Chromosome Location	chr15:45909198-45909199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45908544..45910284-chr15:45911212..45913714,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
4	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv3338975	chr15:45909185-45912033	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45896800-45912400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:45898400-45911000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:45898800-45909200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:45898800-45911600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr15:45899600-45912400	Weak transcription	HSMMtube	muscle
6	chr15:45900800-45911800	Weak transcription	Primary B cells from cord blood	blood
7	chr15:45901600-45909400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:45902200-45910200	Weak transcription	Fetal Brain Female	brain
9	chr15:45906200-45909800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:45908400-45909800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:45908600-45909200	Enhancers	NHLF	lung
12	chr15:45908600-45909400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr15:45908600-45909600	Enhancers	Hela-S3	cervix
14	chr15:45908600-45909800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:45908600-45909800	Enhancers	NHEK	skin
16	chr15:45908800-45909200	Enhancers	Esophagus	oesophagus
17	chr15:45908800-45909400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:45908800-45909600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:45908800-45909800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:45908800-45909800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr15:45908800-45909800	Enhancers	HMEC	breast
22	chr15:45909000-45909200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:45909000-45909200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr15:45909000-45909200	Enhancers	NHDF-Ad	bronchial
25	chr15:45909000-45909400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:45909000-45909600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:45909000-45909600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:45909000-45909600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr15:45909000-45909600	Enhancers	Duodenum Mucosa	Duodenum

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