Variant report

Variant	rs1394077
Chromosome Location	chr3:100526030-100526031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12496951	0.88[YRI][hapmap]
rs1503845	0.81[YRI][hapmap]
rs16842822	0.86[CHD][hapmap];0.88[ASN][1000 genomes]
rs3736534	0.82[CHD][hapmap]
rs544500	0.82[CHD][hapmap]
rs754462	0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7609779	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7612334	0.85[YRI][hapmap]
rs7613610	0.83[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7632038	0.80[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7642942	0.89[CHD][hapmap];0.89[ASN][1000 genomes]
rs764684	0.81[YRI][hapmap]
rs9824346	0.82[YRI][hapmap]
rs983474	0.80[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9842968	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9850273	0.83[CEU][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9879088	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798221	chr3:100518650-100536284	Genic enhancers Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100502400-100530400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:100505200-100558200	Weak transcription	Ovary	ovary
3	chr3:100505200-100582800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:100506000-100548400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:100514200-100547600	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:100514400-100529000	Weak transcription	HSMMtube	muscle
7	chr3:100516000-100572200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:100517400-100594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:100518800-100543000	Weak transcription	Fetal Stomach	stomach
10	chr3:100519600-100530600	Weak transcription	Left Ventricle	heart
11	chr3:100522600-100528400	Strong transcription	Osteobl	bone
12	chr3:100523800-100529400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:100524000-100526800	Weak transcription	Lung	lung
14	chr3:100524000-100529000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:100524200-100529000	Weak transcription	HSMM	muscle
16	chr3:100524200-100529200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:100524200-100537200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:100524800-100526400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:100525200-100526400	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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