Variant report

Variant	rs754462
Chromosome Location	chr3:100514067-100514068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11716316	0.81[CHB][hapmap]
rs12496951	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1394077	0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503839	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1503845	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs16842822	0.83[CHB][hapmap];0.89[ASN][1000 genomes]
rs16842845	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1847391	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs3736534	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3862285	0.91[JPT][hapmap]
rs4616685	0.87[JPT][hapmap]
rs544500	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs547330	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs7609779	0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7612334	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7613610	0.87[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7632038	0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7642942	0.83[CHB][hapmap];0.90[ASN][1000 genomes]
rs764684	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs9824346	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs983474	0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9842968	0.83[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9850273	0.83[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs989793	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs989794	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs989795	0.86[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796184	chr3:100507827-100522384	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs754462	TFG	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100475600-100520000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:100494800-100523400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:100501200-100516600	Weak transcription	HSMM	muscle
4	chr3:100502200-100518600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:100502400-100530400	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:100502600-100516800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:100505000-100515400	Weak transcription	Adipose Nuclei	Adipose
8	chr3:100505000-100515400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:100505000-100516600	Weak transcription	Left Ventricle	heart
10	chr3:100505200-100515200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:100505200-100515200	Weak transcription	Fetal Stomach	stomach
12	chr3:100505200-100515400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:100505200-100515400	Weak transcription	HUVEC	blood vessel
14	chr3:100505200-100558200	Weak transcription	Ovary	ovary
15	chr3:100505200-100582800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:100505600-100514400	Strong transcription	Osteobl	bone
17	chr3:100505800-100515400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:100505800-100515400	Weak transcription	Fetal Lung	lung
19	chr3:100506000-100548400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:100507000-100515400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:100509200-100515400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:100509200-100515400	Weak transcription	NHDF-Ad	bronchial
23	chr3:100509200-100518200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:100512600-100514200	Strong transcription	Fetal Muscle Leg	muscle
25	chr3:100513600-100523000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:100513800-100514400	Strong transcription	HSMMtube	muscle

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