Variant report

Variant	rs1847391
Chromosome Location	chr3:100504995-100504996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11716316	0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12496951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1503839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1503845	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1553455	0.81[EUR][1000 genomes]
rs16842845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1994085	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34281646	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35734168	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3736534	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs3862285	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4616685	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs544500	0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs547330	0.96[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs58758917	0.87[ASN][1000 genomes]
rs754462	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs7609779	0.82[JPT][hapmap]
rs7612334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7613610	0.86[JPT][hapmap]
rs7632038	0.82[JPT][hapmap]
rs764684	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs971230	0.81[EUR][1000 genomes]
rs9824346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs983474	0.82[JPT][hapmap]
rs9842968	0.82[JPT][hapmap]
rs9850273	0.86[JPT][hapmap]
rs989793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs989794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs989795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1847391	TFG	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100475600-100520000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:100494800-100523400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:100496800-100511200	Weak transcription	Aorta	Aorta
4	chr3:100501200-100516600	Weak transcription	HSMM	muscle
5	chr3:100502200-100518600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:100502400-100530400	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:100502600-100516800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:100503600-100505200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:100503600-100505800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:100504000-100505200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
11	chr3:100504000-100506000	Strong transcription	Stomach Smooth Muscle	stomach
12	chr3:100504200-100505200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:100504200-100505200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:100504400-100505000	Strong transcription	NHDF-Ad	bronchial
15	chr3:100504400-100505200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
16	chr3:100504400-100505200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr3:100504400-100505200	ZNF genes & repeats	Fetal Muscle Leg	muscle
18	chr3:100504400-100505200	ZNF genes & repeats	Fetal Stomach	stomach
19	chr3:100504400-100505200	ZNF genes & repeats	Ovary	ovary
20	chr3:100504400-100505200	ZNF genes & repeats	HSMMtube	muscle
21	chr3:100504400-100505600	ZNF genes & repeats	Osteobl	bone
22	chr3:100504400-100505800	ZNF genes & repeats	Fetal Lung	lung
23	chr3:100504600-100505000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:100504600-100505000	ZNF genes & repeats	Adipose Nuclei	Adipose
25	chr3:100504800-100505000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
26	chr3:100504800-100505000	ZNF genes & repeats	Left Ventricle	heart
27	chr3:100504800-100505200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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