Variant report

Variant	rs1394321
Chromosome Location	chr13:90173515-90173516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:90172699..90174465-chr13:90182640..90184619,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12874844	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1504437	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1504438	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1504439	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17395268	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2047905	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34294912	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35003959	0.86[EUR][1000 genomes]
rs3736408	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs515212	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs572497	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs617470	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs618484	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs633976	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs657998	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs669093	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7332656	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7996556	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8001088	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8001305	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9555901	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9555902	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9555906	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9560341	0.87[EUR][1000 genomes]
rs9560355	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9560356	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9560374	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv533455	chr13:90041897-90255725	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv900864	chr13:90110725-90173515	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv3433367	chr13:90162000-90184090	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90171600-90174600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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