Variant report
| Variant | rs1394916 |
|---|---|
| Chromosome Location | chr4:76793228-76793229 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:76791408..76793251-chr4:76794149..76796795,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10007919 | 1.00[YRI][hapmap] |
| rs10031983 | 1.00[YRI][hapmap] |
| rs11097149 | 1.00[AFR][1000 genomes] |
| rs13111494 | 1.00[YRI][hapmap] |
| rs13130917 | 1.00[YRI][hapmap] |
| rs1394913 | 1.00[AFR][1000 genomes] |
| rs1394914 | 1.00[AFR][1000 genomes] |
| rs1394915 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2047977 | 1.00[AFR][1000 genomes] |
| rs2047980 | 0.93[AFR][1000 genomes] |
| rs2135234 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2135235 | 1.00[AFR][1000 genomes] |
| rs2276886 | 1.00[YRI][hapmap] |
| rs2869462 | 1.00[YRI][hapmap] |
| rs35599561 | 0.92[AFR][1000 genomes] |
| rs4859562 | 1.00[AFR][1000 genomes] |
| rs6531993 | 1.00[AFR][1000 genomes] |
| rs6531996 | 1.00[AFR][1000 genomes] |
| rs6842665 | 1.00[AFR][1000 genomes] |
| rs7672213 | 1.00[AFR][1000 genomes] |
| rs7681054 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs7697123 | 1.00[AFR][1000 genomes] |
| rs9884249 | 1.00[YRI][hapmap] |
| rs9994667 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3353539 | chr4:76530136-76993859 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv529613 | chr4:76654941-77081576 | Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
