Variant report

Variant	rs7681054
Chromosome Location	chr4:76783742-76783743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11097149	0.93[AFR][1000 genomes]
rs1394913	0.93[AFR][1000 genomes]
rs1394914	0.93[AFR][1000 genomes]
rs1394915	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1394916	1.00[YRI][hapmap]
rs2047977	0.93[AFR][1000 genomes]
rs2047980	0.86[AFR][1000 genomes]
rs2135234	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2135235	0.93[AFR][1000 genomes]
rs35599561	0.85[AFR][1000 genomes]
rs4859562	0.93[AFR][1000 genomes]
rs57739155	0.86[AFR][1000 genomes]
rs6531993	0.93[AFR][1000 genomes]
rs6531996	0.93[AFR][1000 genomes]
rs6842665	0.93[AFR][1000 genomes]
rs7672213	0.93[AFR][1000 genomes]
rs7697123	0.93[AFR][1000 genomes]
rs9884249	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76782600-76789600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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