Variant report

Variant	rs1396352
Chromosome Location	chr8:118691619-118691620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10955824	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1508558	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1508562	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1508563	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1508568	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs218019	0.96[CEU][hapmap]
rs3105767	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3105774	0.89[EUR][1000 genomes]
rs3134383	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134384	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134385	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7465392	0.93[EUR][1000 genomes]
rs976980	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831438	chr8:118679896-118823600	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv891410	chr8:118684994-118730344	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118684800-118693600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:118685000-118694200	Weak transcription	NHLF	lung
3	chr8:118689000-118694200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:118689200-118692200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:118689200-118698200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:118689200-118698600	Weak transcription	HMEC	breast
7	chr8:118689200-118718600	Weak transcription	Osteobl	bone
8	chr8:118689400-118695200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:118689800-118692200	Weak transcription	NHEK	skin
10	chr8:118690800-118692000	Weak transcription	HSMM	muscle
11	chr8:118690800-118694200	Weak transcription	NHDF-Ad	bronchial
12	chr8:118690800-118701400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links