Variant report

Variant	rs7465392
Chromosome Location	chr8:118682935-118682936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118668898..118670819-chr8:118681548..118683401,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10955824	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1396352	0.93[EUR][1000 genomes]
rs1508558	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1508562	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1508563	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1508568	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs218019	0.96[CEU][hapmap]
rs3105767	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3105774	0.87[EUR][1000 genomes]
rs3134383	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3134384	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3134385	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs976980	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831438	chr8:118679896-118823600	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118676000-118684000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:118680000-118685200	Enhancers	HepG2	liver
3	chr8:118680800-118685200	Enhancers	Liver	Liver
4	chr8:118681000-118684600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:118681000-118685000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:118681000-118685200	Enhancers	HMEC	breast
7	chr8:118681200-118684400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:118681400-118683200	Enhancers	NH-A	brain
9	chr8:118681400-118683800	Enhancers	Osteobl	bone
10	chr8:118681400-118684000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:118681400-118684000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:118681400-118684600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:118681400-118684600	Enhancers	Fetal Intestine Small	intestine
14	chr8:118681400-118684800	Enhancers	HSMM	muscle
15	chr8:118681400-118685000	Enhancers	NHEK	skin
16	chr8:118681400-118685000	Enhancers	NHLF	lung
17	chr8:118681400-118685200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:118681400-118685200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:118681400-118685200	Enhancers	NHDF-Ad	bronchial
20	chr8:118681600-118684800	Enhancers	Fetal Intestine Large	intestine
21	chr8:118681600-118684800	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr8:118681800-118683000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:118682000-118683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:118682000-118683200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:118682000-118683200	Enhancers	Fetal Kidney	kidney
26	chr8:118682400-118683200	Enhancers	Fetal Lung	lung
27	chr8:118682400-118683600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:118682400-118684800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:118682600-118683000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr8:118682600-118683000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr8:118682800-118683000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:118682800-118683000	Enhancers	Ovary	ovary
33	chr8:118682800-118683600	Enhancers	Placenta Amnion	Placenta Amnion

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