Variant report
| Variant | rs1397835 |
|---|---|
| Chromosome Location | chr6:23857069-23857070 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr6:23856760-23857192 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | TAF1 | chr6:23856924-23857071 | Hela-S3 | cervix: | n/a | n/a |
| 3 | POLR2A | chr6:23856919-23857074 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | HEY1 | chr6:23856913-23857095 | K562 | blood: | n/a | n/a |
| 5 | POLR2A | chr6:23856916-23857102 | Hela-S3 | cervix: | n/a | n/a |
| 6 | POLR2A | chr6:23856898-23857178 | GM12892 | blood: | n/a | n/a |
| 7 | HEY1 | chr6:23856864-23857090 | HepG2 | liver: | n/a | n/a |
| 8 | POLR2A | chr6:23856730-23857199 | GM12892 | blood: | n/a | n/a |
| 9 | TAF1 | chr6:23856907-23857075 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 10 | POLR2A | chr6:23856922-23857073 | GM12878 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SPTLC1P2 | TF binding region |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs1511465 | 1.00[AMR][1000 genomes] |
| rs9460932 | 1.00[AMR][1000 genomes] |
| rs9460935 | 1.00[AMR][1000 genomes] |
| rs9466950 | 1.00[AMR][1000 genomes] |
| rs9466951 | 1.00[AMR][1000 genomes] |
| rs9466952 | 1.00[AMR][1000 genomes] |
| rs9466954 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029930 | chr6:23481989-24289948 | Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv3442143 | chr6:23686264-23978363 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv883479 | chr6:23804221-24090497 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv965686 | chr6:23852675-23857094 | Weak transcription ZNF genes & repeats | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
