Variant report

Variant	rs1397886
Chromosome Location	chr3:146427279-146427280
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10935642	0.80[EUR][1000 genomes]
rs12497166	0.81[ASN][1000 genomes]
rs1511565	0.81[ASN][1000 genomes]
rs1511566	0.80[ASN][1000 genomes]
rs1606177	0.81[ASN][1000 genomes]
rs1606178	0.81[ASN][1000 genomes]
rs17371141	0.82[ASN][1000 genomes]
rs1912787	0.81[ASN][1000 genomes]
rs1912788	0.80[ASN][1000 genomes]
rs1912789	0.80[ASN][1000 genomes]
rs2174783	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28885973	0.81[ASN][1000 genomes]
rs2903965	0.80[ASN][1000 genomes]
rs4681335	0.80[ASN][1000 genomes]
rs55895997	0.82[ASN][1000 genomes]
rs6440451	0.81[ASN][1000 genomes]
rs6440455	0.82[ASN][1000 genomes]
rs6781142	0.86[CHB][hapmap]
rs6784712	0.80[ASN][1000 genomes]
rs7638634	0.81[ASN][1000 genomes]
rs961897	0.83[ASN][1000 genomes]
rs9840734	0.82[ASN][1000 genomes]
rs9842074	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1007875	chr3:146401461-146776618	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877624	chr3:146414837-146536741	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998040	chr3:146416916-146729962	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536760	chr3:146416916-146729962	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1001931	chr3:146419061-146745361	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146420200-146432400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:146426600-146427600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:146426600-146427600	Enhancers	Dnd41	blood
4	chr3:146427000-146427600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:146427200-146427800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:146427200-146427800	Enhancers	HSMM	muscle
7	chr3:146427200-146428000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:146427200-146428600	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links