Variant report

Variant	rs1397998
Chromosome Location	chr15:54619962-54619963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11856987	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11858201	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397999	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398002	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1398003	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1511795	1.00[JPT][hapmap]
rs16973458	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16974513	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16974522	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28646103	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28687651	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs487588	1.00[JPT][hapmap]
rs522021	1.00[JPT][hapmap]
rs563881	1.00[JPT][hapmap]
rs564119	1.00[JPT][hapmap]
rs572288	1.00[JPT][hapmap]
rs62012029	0.91[ASN][1000 genomes]
rs6493676	1.00[JPT][hapmap]
rs7182182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8031781	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung
2	chr15:54602800-54638000	Weak transcription	Aorta	Aorta
3	chr15:54617400-54620200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr15:54618600-54620000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr15:54618600-54620200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr15:54618800-54620600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr15:54619000-54620000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr15:54619600-54620000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr15:54619600-54620200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr15:54619800-54620000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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