Variant report

Variant	rs28646103
Chromosome Location	chr15:54620863-54620864
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10851565	0.84[ASN][1000 genomes]
rs10851566	0.85[ASN][1000 genomes]
rs11858201	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13329097	0.86[ASN][1000 genomes]
rs1397998	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1397999	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1398002	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1398003	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16974513	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16974522	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28687651	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7182182	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung
2	chr15:54602800-54638000	Weak transcription	Aorta	Aorta
3	chr15:54620000-54622000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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