Variant report

Variant	rs1398832
Chromosome Location	chr4:21847547-21847548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10033262	0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs1513571	0.83[AFR][1000 genomes]
rs16871966	0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379252	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28503180	0.92[AMR][1000 genomes]
rs56191003	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs61487675	0.92[AMR][1000 genomes]
rs73110024	0.92[AMR][1000 genomes]
rs7677923	0.85[AMR][1000 genomes]
rs986698	1.00[ASW][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21840800-21849600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:21846600-21848000	Enhancers	Osteobl	bone
3	chr4:21846600-21848200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:21846800-21848000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:21846800-21848000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:21847200-21847600	Enhancers	Ovary	ovary
7	chr4:21847200-21847800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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