Variant report
| Variant | rs16871966 |
|---|---|
| Chromosome Location | chr4:21850368-21850369 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GPR125-2 | chr4:21844963-21854811 | UM9-5 |
| 2 | lnc-GPR125-2 | chr4:21844964-21854811 | NONHSAT095745 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:47)
| rs_ID | r2[population] |
|---|---|
| rs10002735 | 1.00[CEU][hapmap] |
| rs10013811 | 1.00[CEU][hapmap] |
| rs10025080 | 1.00[CEU][hapmap] |
| rs10033262 | 0.83[AMR][1000 genomes] |
| rs11934767 | 1.00[CEU][hapmap] |
| rs11936563 | 1.00[CEU][hapmap] |
| rs11939307 | 1.00[CEU][hapmap] |
| rs11943657 | 1.00[CEU][hapmap] |
| rs1398832 | 0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1471220 | 1.00[CEU][hapmap] |
| rs1513577 | 1.00[CEU][hapmap] |
| rs16871711 | 1.00[CEU][hapmap] |
| rs16871712 | 1.00[CEU][hapmap] |
| rs16871840 | 1.00[CEU][hapmap] |
| rs16871847 | 1.00[CEU][hapmap] |
| rs16871854 | 1.00[CEU][hapmap] |
| rs16871866 | 1.00[CEU][hapmap] |
| rs16871869 | 1.00[CEU][hapmap] |
| rs16871879 | 1.00[CEU][hapmap] |
| rs16871882 | 1.00[CEU][hapmap] |
| rs16871885 | 1.00[CEU][hapmap] |
| rs16871890 | 1.00[CEU][hapmap] |
| rs16871892 | 1.00[CEU][hapmap] |
| rs16872036 | 1.00[CEU][hapmap] |
| rs16872041 | 1.00[CEU][hapmap] |
| rs2044808 | 1.00[CEU][hapmap] |
| rs28379252 | 0.83[AMR][1000 genomes] |
| rs28503180 | 0.92[AMR][1000 genomes] |
| rs41423649 | 1.00[CEU][hapmap] |
| rs4624641 | 1.00[CEU][hapmap] |
| rs56191003 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs61487675 | 0.92[AMR][1000 genomes] |
| rs6827460 | 1.00[CEU][hapmap] |
| rs6828953 | 1.00[CEU][hapmap] |
| rs6833077 | 1.00[CEU][hapmap] |
| rs6836396 | 1.00[CEU][hapmap] |
| rs73110024 | 0.92[AMR][1000 genomes] |
| rs7664829 | 1.00[CEU][hapmap] |
| rs7669417 | 1.00[CEU][hapmap] |
| rs7674414 | 1.00[CEU][hapmap] |
| rs7677923 | 0.85[AMR][1000 genomes] |
| rs7679766 | 1.00[CEU][hapmap] |
| rs7683672 | 1.00[CEU][hapmap] |
| rs7695914 | 1.00[CEU][hapmap] |
| rs896120 | 1.00[CEU][hapmap] |
| rs986698 | 0.83[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs9999185 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:21849600-21850600 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr4:21849800-21854400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 3 | chr4:21850000-21851800 | Weak transcription | Ovary | ovary |
