Variant report
| Variant | rs7679766 |
|---|---|
| Chromosome Location | chr4:21720537-21720538 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PACRGL-4 | chr4:21720100-21720649 | ENSG00000248343.1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:49)
| rs_ID | r2[population] |
|---|---|
| rs10002735 | 1.00[CEU][hapmap] |
| rs10013811 | 1.00[CEU][hapmap] |
| rs10025080 | 1.00[CEU][hapmap] |
| rs11934767 | 1.00[CEU][hapmap] |
| rs11936563 | 1.00[CEU][hapmap] |
| rs11939307 | 1.00[CEU][hapmap] |
| rs11942741 | 1.00[AMR][1000 genomes] |
| rs11943657 | 1.00[CEU][hapmap] |
| rs13105122 | 0.80[YRI][hapmap] |
| rs1471220 | 1.00[CEU][hapmap] |
| rs1513577 | 1.00[CEU][hapmap] |
| rs16871413 | 1.00[CEU][hapmap] |
| rs16871434 | 1.00[CEU][hapmap] |
| rs16871535 | 1.00[CEU][hapmap] |
| rs16871580 | 1.00[CEU][hapmap] |
| rs16871591 | 1.00[CEU][hapmap] |
| rs16871711 | 1.00[CEU][hapmap] |
| rs16871712 | 1.00[CEU][hapmap] |
| rs16871840 | 1.00[CEU][hapmap] |
| rs16871847 | 1.00[CEU][hapmap] |
| rs16871854 | 1.00[CEU][hapmap] |
| rs16871866 | 1.00[CEU][hapmap] |
| rs16871869 | 1.00[CEU][hapmap] |
| rs16871879 | 1.00[CEU][hapmap] |
| rs16871882 | 1.00[CEU][hapmap] |
| rs16871885 | 1.00[CEU][hapmap] |
| rs16871890 | 1.00[CEU][hapmap] |
| rs16871892 | 1.00[CEU][hapmap] |
| rs16871966 | 1.00[CEU][hapmap] |
| rs16872036 | 1.00[CEU][hapmap] |
| rs16872041 | 1.00[CEU][hapmap] |
| rs2044808 | 1.00[CEU][hapmap] |
| rs2175780 | 0.86[YRI][hapmap] |
| rs41423649 | 1.00[CEU][hapmap] |
| rs4624641 | 1.00[CEU][hapmap] |
| rs59497071 | 1.00[AMR][1000 genomes] |
| rs6827460 | 1.00[CEU][hapmap] |
| rs6828953 | 1.00[CEU][hapmap] |
| rs6833077 | 1.00[CEU][hapmap] |
| rs6836396 | 1.00[CEU][hapmap] |
| rs716403 | 1.00[CEU][hapmap] |
| rs73115714 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7664829 | 1.00[CEU][hapmap] |
| rs7669417 | 1.00[CEU][hapmap] |
| rs7674414 | 1.00[CEU][hapmap] |
| rs7683672 | 1.00[CEU][hapmap] |
| rs7695914 | 1.00[CEU][hapmap] |
| rs896120 | 1.00[CEU][hapmap] |
| rs9999185 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv878751 | chr4:21712050-21793807 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv964247 | chr4:21720516-21724467 | Weak transcription Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
