Variant report

Variant	rs896120
Chromosome Location	chr4:21789525-21789526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10002735	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011339	0.92[AMR][1000 genomes]
rs10013811	1.00[CEU][hapmap]
rs10021306	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025080	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10033262	0.83[AMR][1000 genomes]
rs11934767	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11936563	1.00[CEU][hapmap]
rs11939307	1.00[CEU][hapmap]
rs11939350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943657	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1471220	1.00[CEU][hapmap]
rs1513577	1.00[CEU][hapmap]
rs16867651	0.96[YRI][hapmap];1.00[AFR][1000 genomes]
rs16871535	1.00[CEU][hapmap]
rs16871580	1.00[CEU][hapmap]
rs16871591	1.00[CEU][hapmap]
rs16871711	1.00[CEU][hapmap]
rs16871712	1.00[CEU][hapmap]
rs16871840	1.00[CEU][hapmap]
rs16871847	1.00[CEU][hapmap]
rs16871854	1.00[CEU][hapmap]
rs16871866	1.00[CEU][hapmap]
rs16871869	1.00[CEU][hapmap]
rs16871879	1.00[CEU][hapmap]
rs16871882	1.00[CEU][hapmap]
rs16871885	1.00[CEU][hapmap]
rs16871890	1.00[CEU][hapmap]
rs16871892	1.00[CEU][hapmap]
rs16871966	1.00[CEU][hapmap]
rs16872036	1.00[CEU][hapmap]
rs16872041	1.00[CEU][hapmap]
rs1849541	0.83[AMR][1000 genomes]
rs1870450	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2044808	1.00[CEU][hapmap]
rs28379252	0.83[AMR][1000 genomes]
rs28452597	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28475189	0.83[AMR][1000 genomes]
rs28547323	0.83[AMR][1000 genomes]
rs28676618	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28754425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41423649	1.00[CEU][hapmap]
rs4624641	1.00[CEU][hapmap]
rs55842595	0.83[AMR][1000 genomes]
rs6827460	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6828953	1.00[CEU][hapmap]
rs6833077	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6836396	1.00[CEU][hapmap]
rs73105917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108038	0.83[AMR][1000 genomes]
rs7664829	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7669417	1.00[CEU][hapmap]
rs7674414	1.00[CEU][hapmap]
rs7679766	1.00[CEU][hapmap]
rs7681022	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7683672	1.00[CEU][hapmap]
rs7695914	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs986698	0.83[AMR][1000 genomes]
rs9991759	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999185	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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