Variant report
| Variant | rs7674414 |
|---|---|
| Chromosome Location | chr4:21716012-21716013 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:46)
| rs_ID | r2[population] |
|---|---|
| rs10002735 | 1.00[CEU][hapmap] |
| rs10013811 | 1.00[CEU][hapmap] |
| rs10025080 | 1.00[CEU][hapmap] |
| rs10025519 | 1.00[EUR][1000 genomes] |
| rs11934767 | 1.00[CEU][hapmap] |
| rs11936563 | 1.00[CEU][hapmap] |
| rs11939307 | 1.00[CEU][hapmap] |
| rs11943657 | 1.00[CEU][hapmap] |
| rs1471220 | 1.00[CEU][hapmap] |
| rs1513577 | 1.00[CEU][hapmap] |
| rs16871413 | 1.00[CEU][hapmap] |
| rs16871434 | 1.00[CEU][hapmap] |
| rs16871535 | 1.00[CEU][hapmap] |
| rs16871580 | 1.00[CEU][hapmap] |
| rs16871591 | 1.00[CEU][hapmap] |
| rs16871711 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16871712 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs16871840 | 1.00[CEU][hapmap] |
| rs16871847 | 1.00[CEU][hapmap] |
| rs16871854 | 1.00[CEU][hapmap] |
| rs16871866 | 1.00[CEU][hapmap] |
| rs16871869 | 1.00[CEU][hapmap] |
| rs16871879 | 1.00[CEU][hapmap] |
| rs16871882 | 1.00[CEU][hapmap] |
| rs16871885 | 1.00[CEU][hapmap] |
| rs16871890 | 1.00[CEU][hapmap] |
| rs16871892 | 1.00[CEU][hapmap] |
| rs16871966 | 1.00[CEU][hapmap] |
| rs16872036 | 1.00[CEU][hapmap] |
| rs16872041 | 1.00[CEU][hapmap] |
| rs2044808 | 1.00[CEU][hapmap] |
| rs41423649 | 1.00[CEU][hapmap] |
| rs4624641 | 1.00[CEU][hapmap] |
| rs6827460 | 1.00[CEU][hapmap] |
| rs6828953 | 1.00[CEU][hapmap] |
| rs6833077 | 1.00[CEU][hapmap] |
| rs6836396 | 1.00[CEU][hapmap] |
| rs716403 | 1.00[CEU][hapmap] |
| rs7664829 | 1.00[CEU][hapmap] |
| rs7669417 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7674871 | 0.83[AMR][1000 genomes] |
| rs7679766 | 1.00[CEU][hapmap] |
| rs7683672 | 1.00[CEU][hapmap] |
| rs7695914 | 1.00[CEU][hapmap] |
| rs896120 | 1.00[CEU][hapmap] |
| rs9999185 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv878751 | chr4:21712050-21793807 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | esv3420109 | chr4:21714454-21718652 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| 4 | esv3357897 | chr4:21715479-21718027 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 5 | esv2497076 | chr4:21715856-21717421 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:21712400-21717400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 2 | chr4:21712400-21718400 | Weak transcription | Ovary | ovary |
