Variant report

Variant	rs16871535
Chromosome Location	chr4:21597699-21597700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10002399	1.00[EUR][1000 genomes]
rs10002735	1.00[CEU][hapmap]
rs10003390	1.00[EUR][1000 genomes]
rs10007854	1.00[EUR][1000 genomes]
rs10013379	1.00[EUR][1000 genomes]
rs10016199	1.00[EUR][1000 genomes]
rs10017100	1.00[EUR][1000 genomes]
rs10019808	1.00[EUR][1000 genomes]
rs10025003	1.00[EUR][1000 genomes]
rs10025080	1.00[CEU][hapmap]
rs10027808	1.00[EUR][1000 genomes]
rs10030329	1.00[EUR][1000 genomes]
rs10516391	1.00[EUR][1000 genomes]
rs11934767	1.00[CEU][hapmap]
rs11936563	1.00[CEU][hapmap]
rs11939307	1.00[CEU][hapmap]
rs11943657	1.00[CEU][hapmap]
rs1460479	1.00[EUR][1000 genomes]
rs1460480	1.00[EUR][1000 genomes]
rs1460481	1.00[EUR][1000 genomes]
rs1471220	1.00[CEU][hapmap]
rs1495514	1.00[EUR][1000 genomes]
rs1580244	1.00[EUR][1000 genomes]
rs16871192	1.00[EUR][1000 genomes]
rs16871195	1.00[EUR][1000 genomes]
rs16871197	1.00[EUR][1000 genomes]
rs16871198	1.00[EUR][1000 genomes]
rs16871214	1.00[EUR][1000 genomes]
rs16871216	1.00[EUR][1000 genomes]
rs16871218	1.00[EUR][1000 genomes]
rs16871238	1.00[EUR][1000 genomes]
rs16871240	1.00[EUR][1000 genomes]
rs16871241	1.00[EUR][1000 genomes]
rs16871264	1.00[EUR][1000 genomes]
rs16871265	1.00[EUR][1000 genomes]
rs16871284	1.00[EUR][1000 genomes]
rs16871286	1.00[EUR][1000 genomes]
rs16871288	1.00[EUR][1000 genomes]
rs16871289	1.00[EUR][1000 genomes]
rs16871290	1.00[EUR][1000 genomes]
rs16871292	1.00[EUR][1000 genomes]
rs16871315	1.00[EUR][1000 genomes]
rs16871330	1.00[EUR][1000 genomes]
rs16871372	1.00[EUR][1000 genomes]
rs16871413	1.00[CEU][hapmap]
rs16871434	1.00[CEU][hapmap]
rs16871580	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16871591	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs16871711	1.00[CEU][hapmap]
rs16871712	1.00[CEU][hapmap]
rs16871840	1.00[CEU][hapmap]
rs16871847	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16871854	1.00[CEU][hapmap]
rs16871866	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16871869	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16871879	1.00[CEU][hapmap]
rs16871882	1.00[CEU][hapmap]
rs16871885	1.00[CEU][hapmap]
rs16871890	1.00[CEU][hapmap]
rs16871892	1.00[CEU][hapmap]
rs17307875	1.00[EUR][1000 genomes]
rs1903321	1.00[EUR][1000 genomes]
rs2044808	1.00[CEU][hapmap]
rs28483282	1.00[EUR][1000 genomes]
rs28493029	1.00[EUR][1000 genomes]
rs28533854	1.00[EUR][1000 genomes]
rs28536057	1.00[EUR][1000 genomes]
rs28545343	1.00[EUR][1000 genomes]
rs28558494	1.00[EUR][1000 genomes]
rs28582299	1.00[EUR][1000 genomes]
rs28590371	1.00[EUR][1000 genomes]
rs28594450	1.00[EUR][1000 genomes]
rs28594626	1.00[EUR][1000 genomes]
rs28600372	1.00[EUR][1000 genomes]
rs28601719	1.00[EUR][1000 genomes]
rs28608541	1.00[EUR][1000 genomes]
rs28621776	1.00[EUR][1000 genomes]
rs28634569	1.00[EUR][1000 genomes]
rs28635194	1.00[EUR][1000 genomes]
rs28708392	1.00[EUR][1000 genomes]
rs4624641	1.00[CEU][hapmap]
rs6826428	1.00[EUR][1000 genomes]
rs6827314	1.00[EUR][1000 genomes]
rs6845225	1.00[EUR][1000 genomes]
rs6849960	1.00[EUR][1000 genomes]
rs6850575	1.00[EUR][1000 genomes]
rs716403	1.00[CEU][hapmap]
rs73107977	1.00[EUR][1000 genomes]
rs73109826	1.00[EUR][1000 genomes]
rs7664829	1.00[CEU][hapmap]
rs7669417	1.00[CEU][hapmap]
rs7674414	1.00[CEU][hapmap]
rs7679766	1.00[CEU][hapmap]
rs7695914	1.00[CEU][hapmap]
rs896120	1.00[CEU][hapmap]
rs9991409	1.00[EUR][1000 genomes]
rs9991717	1.00[EUR][1000 genomes]
rs9994969	1.00[EUR][1000 genomes]
rs9995812	1.00[EUR][1000 genomes]
rs9999185	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1008716	chr4:21580423-21633636	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
8	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21594200-21598400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:21597200-21597800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:21597200-21597800	Enhancers	Colon Smooth Muscle	Colon
4	chr4:21597200-21598000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:21597200-21598000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:21597200-21598800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:21597400-21598200	Enhancers	Brain Hippocampus Middle	brain
8	chr4:21597400-21598600	Enhancers	Brain Anterior Caudate	brain
9	chr4:21597400-21598800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:21597400-21599200	Enhancers	Brain Angular Gyrus	brain
11	chr4:21597600-21597800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr4:21597600-21598800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:21597600-21598800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:21597600-21599400	Enhancers	Brain Substantia Nigra	brain

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