Variant report

Variant	rs16871330
Chromosome Location	chr4:21538475-21538476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10002399	1.00[EUR][1000 genomes]
rs10003390	1.00[EUR][1000 genomes]
rs10007854	1.00[EUR][1000 genomes]
rs10013379	1.00[EUR][1000 genomes]
rs10016199	1.00[EUR][1000 genomes]
rs10017100	1.00[EUR][1000 genomes]
rs10019808	1.00[EUR][1000 genomes]
rs10025003	1.00[EUR][1000 genomes]
rs10027808	1.00[EUR][1000 genomes]
rs10030329	1.00[EUR][1000 genomes]
rs10516391	1.00[EUR][1000 genomes]
rs1460479	1.00[EUR][1000 genomes]
rs1460480	1.00[EUR][1000 genomes]
rs1460481	1.00[EUR][1000 genomes]
rs1495514	1.00[EUR][1000 genomes]
rs1580244	1.00[EUR][1000 genomes]
rs16871192	1.00[EUR][1000 genomes]
rs16871195	1.00[EUR][1000 genomes]
rs16871197	1.00[EUR][1000 genomes]
rs16871198	1.00[EUR][1000 genomes]
rs16871214	1.00[EUR][1000 genomes]
rs16871216	1.00[EUR][1000 genomes]
rs16871218	1.00[EUR][1000 genomes]
rs16871238	1.00[EUR][1000 genomes]
rs16871240	1.00[EUR][1000 genomes]
rs16871241	1.00[EUR][1000 genomes]
rs16871264	1.00[EUR][1000 genomes]
rs16871265	1.00[EUR][1000 genomes]
rs16871284	1.00[EUR][1000 genomes]
rs16871286	1.00[EUR][1000 genomes]
rs16871288	1.00[EUR][1000 genomes]
rs16871289	1.00[EUR][1000 genomes]
rs16871290	1.00[EUR][1000 genomes]
rs16871292	1.00[EUR][1000 genomes]
rs16871315	1.00[EUR][1000 genomes]
rs16871372	1.00[EUR][1000 genomes]
rs16871535	1.00[EUR][1000 genomes]
rs16871591	1.00[EUR][1000 genomes]
rs17307875	1.00[EUR][1000 genomes]
rs1903321	1.00[EUR][1000 genomes]
rs28483282	1.00[EUR][1000 genomes]
rs28493029	1.00[EUR][1000 genomes]
rs28533854	1.00[EUR][1000 genomes]
rs28536057	1.00[EUR][1000 genomes]
rs28545343	1.00[EUR][1000 genomes]
rs28558494	1.00[EUR][1000 genomes]
rs28582299	1.00[EUR][1000 genomes]
rs28590371	1.00[EUR][1000 genomes]
rs28594450	1.00[EUR][1000 genomes]
rs28594626	1.00[EUR][1000 genomes]
rs28600372	1.00[EUR][1000 genomes]
rs28601719	1.00[EUR][1000 genomes]
rs28608541	1.00[EUR][1000 genomes]
rs28621776	1.00[EUR][1000 genomes]
rs28634569	1.00[EUR][1000 genomes]
rs28635194	1.00[EUR][1000 genomes]
rs28708392	1.00[EUR][1000 genomes]
rs6826428	1.00[EUR][1000 genomes]
rs6827314	1.00[EUR][1000 genomes]
rs6845225	1.00[EUR][1000 genomes]
rs6849960	1.00[EUR][1000 genomes]
rs6850575	1.00[EUR][1000 genomes]
rs73107977	1.00[EUR][1000 genomes]
rs73109826	1.00[EUR][1000 genomes]
rs9991409	1.00[EUR][1000 genomes]
rs9991717	1.00[EUR][1000 genomes]
rs9994969	1.00[EUR][1000 genomes]
rs9995812	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv997742	chr4:21515920-21575213	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1002353	chr4:21518045-21575213	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv1001219	chr4:21518045-21580423	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
8	esv2760860	chr4:21518045-21580435	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
9	nsv525271	chr4:21519577-21575623	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	nsv470019	chr4:21519577-21576754	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	nsv593805	chr4:21519577-21576754	Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21536000-21539600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:21536400-21544400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:21536800-21540000	Weak transcription	Gastric	stomach
4	chr4:21537600-21538800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:21538000-21538800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:21538000-21543000	Weak transcription	Colon Smooth Muscle	Colon

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