Variant report

Variant	rs16871288
Chromosome Location	chr4:21511306-21511307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21510988..21512730-chr4:21514428..21516962,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10002399	1.00[EUR][1000 genomes]
rs10003390	1.00[EUR][1000 genomes]
rs10007854	1.00[EUR][1000 genomes]
rs10013379	1.00[EUR][1000 genomes]
rs10016199	1.00[EUR][1000 genomes]
rs10017100	1.00[EUR][1000 genomes]
rs10019808	1.00[EUR][1000 genomes]
rs10025003	1.00[EUR][1000 genomes]
rs10027808	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10030329	1.00[EUR][1000 genomes]
rs10516391	1.00[EUR][1000 genomes]
rs13119355	1.00[ASN][1000 genomes]
rs13131712	1.00[ASN][1000 genomes]
rs13152800	1.00[ASN][1000 genomes]
rs1460479	0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1460480	0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1460481	0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1495514	1.00[EUR][1000 genomes]
rs1580244	1.00[EUR][1000 genomes]
rs16871192	1.00[EUR][1000 genomes]
rs16871195	1.00[EUR][1000 genomes]
rs16871197	1.00[EUR][1000 genomes]
rs16871198	1.00[EUR][1000 genomes]
rs16871214	1.00[EUR][1000 genomes]
rs16871216	1.00[EUR][1000 genomes]
rs16871218	1.00[EUR][1000 genomes]
rs16871238	1.00[EUR][1000 genomes]
rs16871240	1.00[EUR][1000 genomes]
rs16871241	1.00[EUR][1000 genomes]
rs16871264	1.00[EUR][1000 genomes]
rs16871265	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16871284	1.00[EUR][1000 genomes]
rs16871286	0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871289	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871290	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871292	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871315	1.00[EUR][1000 genomes]
rs16871330	1.00[EUR][1000 genomes]
rs16871372	1.00[EUR][1000 genomes]
rs16871535	1.00[EUR][1000 genomes]
rs16871591	1.00[EUR][1000 genomes]
rs17307875	1.00[EUR][1000 genomes]
rs1903321	1.00[EUR][1000 genomes]
rs28473594	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28483282	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28493029	1.00[EUR][1000 genomes]
rs28533854	1.00[EUR][1000 genomes]
rs28536057	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28545343	1.00[EUR][1000 genomes]
rs28558494	1.00[EUR][1000 genomes]
rs28582299	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28590371	1.00[EUR][1000 genomes]
rs28594450	1.00[EUR][1000 genomes]
rs28594626	1.00[EUR][1000 genomes]
rs28600372	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28601719	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28608541	1.00[EUR][1000 genomes]
rs28621776	1.00[EUR][1000 genomes]
rs28634569	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28635194	1.00[EUR][1000 genomes]
rs28708392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34545645	1.00[ASN][1000 genomes]
rs35752977	1.00[ASN][1000 genomes]
rs6823425	0.82[AFR][1000 genomes]
rs6826428	1.00[EUR][1000 genomes]
rs6827314	1.00[EUR][1000 genomes]
rs6845225	1.00[EUR][1000 genomes]
rs6849960	1.00[EUR][1000 genomes]
rs6850575	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73107977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73109826	1.00[EUR][1000 genomes]
rs73800230	1.00[ASN][1000 genomes]
rs9990833	1.00[ASN][1000 genomes]
rs9991409	1.00[EUR][1000 genomes]
rs9991717	1.00[EUR][1000 genomes]
rs9994969	1.00[EUR][1000 genomes]
rs9995812	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv878750	chr4:21492445-21520250	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21497000-21514200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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