Variant report

Variant	rs1580244
Chromosome Location	chr4:21546400-21546401
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10002399	1.00[EUR][1000 genomes]
rs10003390	1.00[EUR][1000 genomes]
rs10007854	1.00[EUR][1000 genomes]
rs10013379	1.00[EUR][1000 genomes]
rs10016199	1.00[EUR][1000 genomes]
rs10017100	1.00[EUR][1000 genomes]
rs10019808	1.00[EUR][1000 genomes]
rs10025003	1.00[EUR][1000 genomes]
rs10027808	1.00[EUR][1000 genomes]
rs10030329	1.00[EUR][1000 genomes]
rs10516391	1.00[EUR][1000 genomes]
rs1460479	1.00[EUR][1000 genomes]
rs1460480	1.00[EUR][1000 genomes]
rs1460481	1.00[EUR][1000 genomes]
rs1495514	1.00[EUR][1000 genomes]
rs16871192	1.00[EUR][1000 genomes]
rs16871195	1.00[EUR][1000 genomes]
rs16871197	1.00[EUR][1000 genomes]
rs16871198	1.00[EUR][1000 genomes]
rs16871214	1.00[EUR][1000 genomes]
rs16871216	1.00[EUR][1000 genomes]
rs16871218	1.00[EUR][1000 genomes]
rs16871238	1.00[EUR][1000 genomes]
rs16871240	1.00[EUR][1000 genomes]
rs16871241	1.00[EUR][1000 genomes]
rs16871264	1.00[EUR][1000 genomes]
rs16871265	1.00[EUR][1000 genomes]
rs16871284	1.00[EUR][1000 genomes]
rs16871286	1.00[EUR][1000 genomes]
rs16871288	1.00[EUR][1000 genomes]
rs16871289	1.00[EUR][1000 genomes]
rs16871290	1.00[EUR][1000 genomes]
rs16871292	1.00[EUR][1000 genomes]
rs16871315	1.00[EUR][1000 genomes]
rs16871330	1.00[EUR][1000 genomes]
rs16871372	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871535	1.00[EUR][1000 genomes]
rs16871591	1.00[EUR][1000 genomes]
rs17307875	1.00[EUR][1000 genomes]
rs1903321	1.00[EUR][1000 genomes]
rs28483282	1.00[EUR][1000 genomes]
rs28493029	1.00[EUR][1000 genomes]
rs28533854	1.00[EUR][1000 genomes]
rs28536057	1.00[EUR][1000 genomes]
rs28545343	1.00[EUR][1000 genomes]
rs28558494	1.00[EUR][1000 genomes]
rs28582299	1.00[EUR][1000 genomes]
rs28590371	1.00[EUR][1000 genomes]
rs28594450	1.00[EUR][1000 genomes]
rs28594626	1.00[EUR][1000 genomes]
rs28600372	1.00[EUR][1000 genomes]
rs28601719	1.00[EUR][1000 genomes]
rs28608541	1.00[EUR][1000 genomes]
rs28621776	1.00[EUR][1000 genomes]
rs28634569	1.00[EUR][1000 genomes]
rs28635194	1.00[EUR][1000 genomes]
rs28708392	1.00[EUR][1000 genomes]
rs6826428	1.00[EUR][1000 genomes]
rs6827314	1.00[EUR][1000 genomes]
rs6845225	1.00[EUR][1000 genomes]
rs6849960	1.00[EUR][1000 genomes]
rs6850575	1.00[EUR][1000 genomes]
rs73107977	1.00[EUR][1000 genomes]
rs73109826	1.00[EUR][1000 genomes]
rs9991409	1.00[EUR][1000 genomes]
rs9991717	1.00[EUR][1000 genomes]
rs9994969	1.00[EUR][1000 genomes]
rs9995812	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv997742	chr4:21515920-21575213	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1002353	chr4:21518045-21575213	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv1001219	chr4:21518045-21580423	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
8	esv2760860	chr4:21518045-21580435	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
9	nsv525271	chr4:21519577-21575623	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	nsv470019	chr4:21519577-21576754	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	nsv593805	chr4:21519577-21576754	Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
12	nsv1009425	chr4:21542141-21566178	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21544800-21546600	Active TSS	Fetal Kidney	kidney
2	chr4:21544800-21546800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:21545000-21546400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:21545600-21546400	Active TSS	Fetal Muscle Trunk	muscle
5	chr4:21545600-21546600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr4:21545800-21546600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr4:21545800-21547000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:21546000-21546400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr4:21546000-21546400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
10	chr4:21546000-21546400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:21546000-21546400	Enhancers	Adipose Nuclei	Adipose
12	chr4:21546000-21546400	Enhancers	Ovary	ovary
13	chr4:21546000-21546400	Enhancers	Pancreas	Pancrea
14	chr4:21546000-21546600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
15	chr4:21546000-21546600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr4:21546000-21546600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr4:21546000-21546800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:21546200-21546600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:21546200-21546800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:21546200-21547000	Enhancers	Fetal Heart	heart
21	chr4:21546400-21546600	Enhancers	H9 Cell Line	embryonic stem cell
22	chr4:21546400-21546800	Enhancers	H1 Cell Line	embryonic stem cell

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