Variant report

Variant	rs16871869
Chromosome Location	chr4:21767133-21767134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21513432..21514751-chr4:21767040..21768803,10	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10002735	1.00[CEU][hapmap]
rs10013811	1.00[CEU][hapmap]
rs10025080	1.00[CEU][hapmap]
rs11934767	1.00[CEU][hapmap]
rs11936563	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs11939307	1.00[CEU][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs11943657	1.00[CEU][hapmap]
rs1450728	1.00[AMR][1000 genomes]
rs1471220	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1513577	1.00[CEU][hapmap]
rs16871535	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16871580	1.00[CEU][hapmap]
rs16871591	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16871711	1.00[CEU][hapmap]
rs16871712	1.00[CEU][hapmap]
rs16871840	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16871847	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871854	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16871866	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871879	1.00[CEU][hapmap]
rs16871882	1.00[CEU][hapmap]
rs16871885	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs16871890	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs16871892	1.00[CEU][hapmap]
rs16871966	1.00[CEU][hapmap]
rs16872036	1.00[CEU][hapmap]
rs16872041	1.00[CEU][hapmap]
rs2044808	1.00[CEU][hapmap]
rs2323107	1.00[AMR][1000 genomes]
rs28847579	1.00[EUR][1000 genomes]
rs41423649	1.00[CEU][hapmap]
rs4550913	1.00[AMR][1000 genomes]
rs4624641	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6827460	1.00[CEU][hapmap]
rs6828953	1.00[CEU][hapmap]
rs6833077	1.00[CEU][hapmap]
rs6836396	1.00[CEU][hapmap]
rs716403	1.00[CEU][hapmap]
rs7664829	1.00[CEU][hapmap]
rs7669417	1.00[CEU][hapmap]
rs7674414	1.00[CEU][hapmap]
rs7679766	1.00[CEU][hapmap]
rs7683672	1.00[CEU][hapmap]
rs7695914	1.00[CEU][hapmap]
rs896120	1.00[CEU][hapmap]
rs9999185	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv980440	chr4:21765590-21771393	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21766000-21771000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:21766400-21767600	Weak transcription	Fetal Heart	heart
3	chr4:21766400-21770000	Weak transcription	HMEC	breast
4	chr4:21766600-21780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:21767000-21767200	Enhancers	Fetal Brain Male	brain

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