Variant report

Variant	rs7669417
Chromosome Location	chr4:21709938-21709939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10002735	1.00[CEU][hapmap]
rs10013811	1.00[CEU][hapmap]
rs10025080	1.00[CEU][hapmap]
rs10025519	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11934767	1.00[CEU][hapmap]
rs11936563	1.00[CEU][hapmap]
rs11939307	1.00[CEU][hapmap]
rs11943657	1.00[CEU][hapmap]
rs1471220	1.00[CEU][hapmap]
rs1513577	1.00[CEU][hapmap]
rs16871413	1.00[CEU][hapmap]
rs16871434	1.00[CEU][hapmap]
rs16871535	1.00[CEU][hapmap]
rs16871580	1.00[CEU][hapmap]
rs16871591	1.00[CEU][hapmap]
rs16871711	0.91[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.93[MEX][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871712	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16871840	1.00[CEU][hapmap]
rs16871847	1.00[CEU][hapmap]
rs16871854	1.00[CEU][hapmap]
rs16871866	1.00[CEU][hapmap]
rs16871869	1.00[CEU][hapmap]
rs16871879	1.00[CEU][hapmap]
rs16871882	1.00[CEU][hapmap]
rs16871885	1.00[CEU][hapmap]
rs16871890	1.00[CEU][hapmap]
rs16871892	1.00[CEU][hapmap]
rs16871966	1.00[CEU][hapmap]
rs16872036	1.00[CEU][hapmap]
rs16872041	1.00[CEU][hapmap]
rs2044808	1.00[CEU][hapmap]
rs41423649	1.00[CEU][hapmap]
rs4624641	1.00[CEU][hapmap]
rs6824695	1.00[CEU][hapmap]
rs6827460	1.00[CEU][hapmap]
rs6828953	1.00[CEU][hapmap]
rs6833077	1.00[CEU][hapmap]
rs6836396	1.00[CEU][hapmap]
rs716403	1.00[CEU][hapmap]
rs7664829	1.00[CEU][hapmap]
rs7674414	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7679766	1.00[CEU][hapmap]
rs7683672	1.00[CEU][hapmap]
rs7695914	1.00[CEU][hapmap]
rs896120	1.00[CEU][hapmap]
rs9999185	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21709800-21710200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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