Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10002735	1.00[CEU][hapmap]
rs10013811	1.00[CEU][hapmap]
rs10025080	1.00[CEU][hapmap]
rs11934767	1.00[CEU][hapmap]
rs11936563	1.00[CEU][hapmap]
rs11939307	1.00[CEU][hapmap]
rs11943657	1.00[CEU][hapmap]
rs1471220	1.00[CEU][hapmap]
rs1513577	1.00[CEU][hapmap]
rs16871711	1.00[CEU][hapmap]
rs16871712	1.00[CEU][hapmap]
rs16871840	1.00[CEU][hapmap]
rs16871847	1.00[CEU][hapmap]
rs16871854	1.00[CEU][hapmap]
rs16871866	1.00[CEU][hapmap]
rs16871869	1.00[CEU][hapmap]
rs16871879	1.00[CEU][hapmap]
rs16871882	1.00[CEU][hapmap]
rs16871885	1.00[CEU][hapmap]
rs16871890	1.00[CEU][hapmap]
rs16871892	1.00[CEU][hapmap]
rs16871966	1.00[CEU][hapmap]
rs16872028	1.00[AFR][1000 genomes]
rs16872036	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2044808	1.00[CEU][hapmap]
rs41423649	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4624641	1.00[CEU][hapmap]
rs6827460	1.00[CEU][hapmap]
rs6828953	1.00[CEU][hapmap]
rs6833077	1.00[CEU][hapmap]
rs6836396	1.00[CEU][hapmap]
rs7664829	1.00[CEU][hapmap]
rs7669417	1.00[CEU][hapmap]
rs7674414	1.00[CEU][hapmap]
rs7679766	1.00[CEU][hapmap]
rs7683672	1.00[CEU][hapmap]
rs7695914	1.00[CEU][hapmap]
rs896120	1.00[CEU][hapmap]
rs9999185	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21881200-21886400	Weak transcription	Osteobl	bone
2	chr4:21883600-21884600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:21883800-21886400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:21884000-21886400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:21884000-21888800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:21884200-21885200	Enhancers	HMEC	breast
7	chr4:21884200-21886600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:21884400-21886200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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