Variant report

Variant	rs9999185
Chromosome Location	chr4:21792811-21792812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21790330..21793132-chr4:22390550..22391689,10	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10002735	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011339	0.92[AMR][1000 genomes]
rs10013811	1.00[CEU][hapmap]
rs10021306	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025080	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10033262	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs11934767	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11936563	1.00[CEU][hapmap]
rs11939307	1.00[CEU][hapmap]
rs11939350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943657	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1471220	1.00[CEU][hapmap]
rs1513577	1.00[CEU][hapmap]
rs16867651	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16871535	1.00[CEU][hapmap]
rs16871580	1.00[CEU][hapmap]
rs16871591	1.00[CEU][hapmap]
rs16871711	1.00[CEU][hapmap]
rs16871712	1.00[CEU][hapmap]
rs16871840	1.00[CEU][hapmap]
rs16871847	1.00[CEU][hapmap]
rs16871854	1.00[CEU][hapmap]
rs16871866	1.00[CEU][hapmap]
rs16871869	1.00[CEU][hapmap]
rs16871879	1.00[CEU][hapmap]
rs16871882	1.00[CEU][hapmap]
rs16871885	1.00[CEU][hapmap]
rs16871890	1.00[CEU][hapmap]
rs16871892	1.00[CEU][hapmap]
rs16871966	1.00[CEU][hapmap]
rs16872036	1.00[CEU][hapmap]
rs16872041	1.00[CEU][hapmap]
rs1849541	0.83[AMR][1000 genomes]
rs1870450	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2044808	1.00[CEU][hapmap]
rs28379252	0.83[AMR][1000 genomes]
rs28452597	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28475189	0.83[AMR][1000 genomes]
rs28547323	0.83[AMR][1000 genomes]
rs28676618	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28754425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41423649	1.00[CEU][hapmap]
rs4624641	1.00[CEU][hapmap]
rs55842595	0.83[AMR][1000 genomes]
rs6827460	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6828953	1.00[CEU][hapmap]
rs6833077	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6836396	1.00[CEU][hapmap]
rs73105917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108038	0.83[AMR][1000 genomes]
rs7664829	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7669417	1.00[CEU][hapmap]
rs7674414	1.00[CEU][hapmap]
rs7679766	1.00[CEU][hapmap]
rs7681022	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7683672	1.00[CEU][hapmap]
rs7695914	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs896120	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap]
rs986698	0.83[AMR][1000 genomes]
rs9991759	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21792400-21793000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:21792400-21793000	Enhancers	NH-A	brain
3	chr4:21792400-21793200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:21792400-21793200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:21792400-21793400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:21792600-21793000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:21792600-21793000	Flanking Active TSS	HSMMtube	muscle
8	chr4:21792600-21793200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr4:21792600-21793400	Enhancers	HSMM	muscle
10	chr4:21792800-21793200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:21792800-21793200	Enhancers	Ovary	ovary
12	chr4:21792800-21793200	Flanking Active TSS	Osteobl	bone

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