Variant report

Variant	rs11939350
Chromosome Location	chr4:21793994-21793995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10002735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011339	0.92[AMR][1000 genomes]
rs10021306	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10033262	0.83[AMR][1000 genomes]
rs11934767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867651	1.00[AFR][1000 genomes]
rs1849541	0.83[AMR][1000 genomes]
rs1870450	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28379252	0.83[AMR][1000 genomes]
rs28452597	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28475189	0.83[AMR][1000 genomes]
rs28547323	0.83[AMR][1000 genomes]
rs28676618	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28754425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55842595	0.83[AMR][1000 genomes]
rs6827460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6833077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73105917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108038	0.83[AMR][1000 genomes]
rs7664829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7681022	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7695914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs986698	0.83[AMR][1000 genomes]
rs9991759	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21793000-21794400	Enhancers	HSMMtube	muscle
2	chr4:21793200-21794200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:21793200-21794600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:21793200-21794600	Enhancers	Osteobl	bone
5	chr4:21793400-21794000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:21793400-21794200	Weak transcription	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links