Variant report

Variant	rs10021306
Chromosome Location	chr4:21792750-21792751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10002735	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011339	0.92[AMR][1000 genomes]
rs10025080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10033262	0.83[AMR][1000 genomes]
rs11934767	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939350	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943657	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867651	0.97[AFR][1000 genomes]
rs1849541	0.83[AMR][1000 genomes]
rs1870450	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28379252	0.83[AMR][1000 genomes]
rs28452597	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28475189	0.83[AMR][1000 genomes]
rs28547323	0.83[AMR][1000 genomes]
rs28676618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28754425	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55842595	0.83[AMR][1000 genomes]
rs6827460	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6833077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73105917	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108038	0.83[AMR][1000 genomes]
rs7664829	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7681022	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7695914	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs986698	0.83[AMR][1000 genomes]
rs9991759	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999185	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21791600-21792800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:21792400-21792800	Enhancers	Osteobl	bone
3	chr4:21792400-21793000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:21792400-21793000	Enhancers	NH-A	brain
5	chr4:21792400-21793200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:21792400-21793200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:21792400-21793400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:21792600-21793000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:21792600-21793000	Flanking Active TSS	HSMMtube	muscle
10	chr4:21792600-21793200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr4:21792600-21793400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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