Variant report

Variant	rs28475189
Chromosome Location	chr4:21821103-21821104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10002735	0.83[AMR][1000 genomes]
rs10021306	0.83[AMR][1000 genomes]
rs10025080	0.83[AMR][1000 genomes]
rs10033262	0.83[AMR][1000 genomes]
rs11934767	0.83[AMR][1000 genomes]
rs11939350	0.83[AMR][1000 genomes]
rs11943657	0.83[AMR][1000 genomes]
rs1849541	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379252	0.83[AMR][1000 genomes]
rs28452597	0.83[AMR][1000 genomes]
rs28547323	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578495	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28676618	0.83[AMR][1000 genomes]
rs28754425	0.83[AMR][1000 genomes]
rs55842595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827460	0.83[AMR][1000 genomes]
rs6833077	0.83[AMR][1000 genomes]
rs73105917	0.83[AMR][1000 genomes]
rs73108038	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7664829	0.83[AMR][1000 genomes]
rs7681022	0.83[AMR][1000 genomes]
rs7695914	0.83[AMR][1000 genomes]
rs986698	0.83[AMR][1000 genomes]
rs9991759	0.83[AMR][1000 genomes]
rs9999185	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21820400-21821200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:21820600-21821200	Enhancers	Colon Smooth Muscle	Colon
3	chr4:21820800-21821200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr4:21820800-21821200	Enhancers	Fetal Brain Male	brain
5	chr4:21820800-21821200	Enhancers	Rectal Smooth Muscle	rectum
6	chr4:21821000-21821200	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links