Variant report

Variant	rs28578495
Chromosome Location	chr4:21807112-21807113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10000470	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10033262	0.91[AMR][1000 genomes]
rs1849541	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1870450	0.82[AMR][1000 genomes]
rs28379252	0.91[AMR][1000 genomes]
rs28475189	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28547323	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs55842595	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58501933	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73108038	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs986698	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21805000-21813200	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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