Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10002735	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011339	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021306	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025080	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10033262	0.83[AMR][1000 genomes]
rs11934767	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939350	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11942741	1.00[EUR][1000 genomes]
rs11943657	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867651	0.84[AFR][1000 genomes]
rs1849541	0.83[AMR][1000 genomes]
rs1870450	0.91[AMR][1000 genomes]
rs28379252	0.83[AMR][1000 genomes]
rs28405202	1.00[EUR][1000 genomes]
rs28452597	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28475189	0.83[AMR][1000 genomes]
rs28547323	0.83[AMR][1000 genomes]
rs28676618	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28754425	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55842595	0.83[AMR][1000 genomes]
rs6827460	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6833077	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73105917	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108038	0.83[AMR][1000 genomes]
rs7664829	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7695914	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs986698	0.83[AMR][1000 genomes]
rs9991759	1.00[AMR][1000 genomes]
rs9999185	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21803000-21805000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:21803000-21805000	Enhancers	HSMMtube	muscle
3	chr4:21803000-21805200	Enhancers	Osteobl	bone
4	chr4:21803400-21805000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:21803400-21805200	Enhancers	HSMM	muscle
6	chr4:21803800-21805000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:21803800-21806000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:21804200-21805000	Enhancers	NH-A	brain
9	chr4:21804200-21805200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:21804200-21805400	Enhancers	HUVEC	blood vessel
11	chr4:21804600-21805600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:21804800-21805000	Enhancers	NHLF	lung

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