Variant report
| Variant | rs28405202 |
|---|---|
| Chromosome Location | chr4:21795277-21795278 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:21793571..21796261-chr4:21796696..21799237,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10000721 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10001862 | 1.00[AMR][1000 genomes] |
| rs10002474 | 1.00[AMR][1000 genomes] |
| rs10011129 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10011132 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10011339 | 1.00[EUR][1000 genomes] |
| rs10014212 | 1.00[AMR][1000 genomes] |
| rs10014405 | 1.00[AMR][1000 genomes] |
| rs10014715 | 1.00[AMR][1000 genomes] |
| rs10025281 | 1.00[AMR][1000 genomes] |
| rs11942741 | 1.00[EUR][1000 genomes] |
| rs28493436 | 1.00[AMR][1000 genomes] |
| rs28529738 | 1.00[AMR][1000 genomes] |
| rs28632151 | 1.00[AMR][1000 genomes] |
| rs28740999 | 1.00[AMR][1000 genomes] |
| rs28756116 | 1.00[AMR][1000 genomes] |
| rs3892322 | 1.00[AMR][1000 genomes] |
| rs7681022 | 1.00[EUR][1000 genomes] |
| rs9990680 | 1.00[AMR][1000 genomes] |
| rs9995309 | 1.00[AMR][1000 genomes] |
| rs9995311 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv4269 | chr4:21761429-21806056 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv1005221 | chr4:21786702-21822000 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:21794600-21803000 | Weak transcription | Muscle Satellite Cultured Cells | -- |
