Variant report
| Variant | rs10025281 |
|---|---|
| Chromosome Location | chr4:21845051-21845052 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:21843638..21845435-chr4:21850598..21852642,2 | MCF-7 | breast: |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GPR125-2 | chr4:21844963-21854811 | UM9-5 |
| 2 | lnc-GPR125-2 | chr4:21844964-21854811 | NONHSAT095745 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10000721 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10001862 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10002474 | 1.00[AMR][1000 genomes] |
| rs10011129 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10011132 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10014212 | 1.00[AMR][1000 genomes] |
| rs10014405 | 1.00[AMR][1000 genomes] |
| rs10014715 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28405202 | 1.00[AMR][1000 genomes] |
| rs28493436 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28529738 | 1.00[AMR][1000 genomes] |
| rs28632151 | 1.00[AMR][1000 genomes] |
| rs28722532 | 1.00[AFR][1000 genomes] |
| rs28740999 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28756116 | 1.00[AMR][1000 genomes] |
| rs3892322 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9990680 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9995309 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9995311 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:21840800-21849600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
