Variant report

Variant	rs9995311
Chromosome Location	chr4:21853091-21853092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10000721	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10001862	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10002474	1.00[AMR][1000 genomes]
rs10011129	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011132	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10014212	1.00[AMR][1000 genomes]
rs10014405	1.00[AMR][1000 genomes]
rs10014715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025281	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28405202	1.00[AMR][1000 genomes]
rs28493436	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529738	1.00[AMR][1000 genomes]
rs28632151	1.00[AMR][1000 genomes]
rs28722532	0.90[AFR][1000 genomes]
rs28740999	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28756116	1.00[AMR][1000 genomes]
rs3892322	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9990680	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9995309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21849800-21854400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:21850600-21854200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:21852800-21853200	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links