Variant report

Variant	rs10002474
Chromosome Location	chr4:21734022-21734023
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10000721	1.00[AMR][1000 genomes]
rs10001862	1.00[AMR][1000 genomes]
rs10007968	1.00[YRI][hapmap]
rs10011129	1.00[AMR][1000 genomes]
rs10011132	1.00[AMR][1000 genomes]
rs10014212	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10014405	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10014715	1.00[AMR][1000 genomes]
rs10025281	1.00[AMR][1000 genomes]
rs28405202	1.00[AMR][1000 genomes]
rs28493436	1.00[AMR][1000 genomes]
rs28529738	1.00[AMR][1000 genomes]
rs28632151	1.00[AMR][1000 genomes]
rs28740999	1.00[AMR][1000 genomes]
rs28756116	1.00[AMR][1000 genomes]
rs3892322	1.00[AMR][1000 genomes]
rs9990680	1.00[AMR][1000 genomes]
rs9995309	1.00[AMR][1000 genomes]
rs9995311	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21730600-21735600	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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