Variant report
| Variant | rs41423649 |
|---|---|
| Chromosome Location | chr4:21898055-21898056 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10002735 | 1.00[CEU][hapmap] |
| rs10013811 | 1.00[CEU][hapmap] |
| rs10025080 | 1.00[CEU][hapmap] |
| rs11934767 | 1.00[CEU][hapmap] |
| rs11936563 | 1.00[CEU][hapmap] |
| rs11939307 | 1.00[CEU][hapmap] |
| rs11943657 | 1.00[CEU][hapmap] |
| rs1471220 | 1.00[CEU][hapmap] |
| rs1513577 | 1.00[CEU][hapmap] |
| rs16871711 | 1.00[CEU][hapmap] |
| rs16871712 | 1.00[CEU][hapmap] |
| rs16871840 | 1.00[CEU][hapmap] |
| rs16871847 | 1.00[CEU][hapmap] |
| rs16871854 | 1.00[CEU][hapmap] |
| rs16871866 | 1.00[CEU][hapmap] |
| rs16871869 | 1.00[CEU][hapmap] |
| rs16871879 | 1.00[CEU][hapmap] |
| rs16871882 | 1.00[CEU][hapmap] |
| rs16871885 | 1.00[CEU][hapmap] |
| rs16871890 | 1.00[CEU][hapmap] |
| rs16871892 | 1.00[CEU][hapmap] |
| rs16871966 | 1.00[CEU][hapmap] |
| rs16872028 | 1.00[AFR][1000 genomes] |
| rs16872036 | 1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs16872041 | 1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2044808 | 1.00[CEU][hapmap] |
| rs4624641 | 1.00[CEU][hapmap] |
| rs6827460 | 1.00[CEU][hapmap] |
| rs6828953 | 1.00[CEU][hapmap] |
| rs6833077 | 1.00[CEU][hapmap] |
| rs6836396 | 1.00[CEU][hapmap] |
| rs7664829 | 1.00[CEU][hapmap] |
| rs7669417 | 1.00[CEU][hapmap] |
| rs7674414 | 1.00[CEU][hapmap] |
| rs7679766 | 1.00[CEU][hapmap] |
| rs7683672 | 1.00[CEU][hapmap] |
| rs7695914 | 1.00[CEU][hapmap] |
| rs896120 | 1.00[CEU][hapmap] |
| rs9999185 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv2757924 | chr4:21873204-21980559 | Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2759231 | chr4:21873204-21980559 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv428440 | chr4:21873204-21980559 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:21891200-21899600 | Weak transcription | HMEC | breast |
| 2 | chr4:21893200-21899400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
