Variant report

Variant	rs16871879
Chromosome Location	chr4:21768887-21768888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21765094..21766763-chr4:21768387..21770633,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10002735	1.00[CEU][hapmap]
rs10013811	1.00[CEU][hapmap]
rs10025080	1.00[CEU][hapmap]
rs11734604	0.94[YRI][hapmap]
rs11934767	1.00[CEU][hapmap]
rs11936372	0.93[AFR][1000 genomes]
rs11936379	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11936563	1.00[CEU][hapmap]
rs11939307	1.00[CEU][hapmap]
rs11943657	1.00[CEU][hapmap]
rs11944423	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11945440	0.96[AFR][1000 genomes]
rs1471220	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1513577	1.00[CEU][hapmap]
rs16871535	1.00[CEU][hapmap]
rs16871580	1.00[CEU][hapmap]
rs16871591	1.00[CEU][hapmap]
rs16871711	1.00[CEU][hapmap]
rs16871712	1.00[CEU][hapmap]
rs16871840	1.00[CEU][hapmap]
rs16871847	1.00[CEU][hapmap]
rs16871854	1.00[CEU][hapmap]
rs16871866	1.00[CEU][hapmap]
rs16871869	1.00[CEU][hapmap]
rs16871882	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871885	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871890	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871892	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871966	1.00[CEU][hapmap]
rs16872036	1.00[CEU][hapmap]
rs16872041	1.00[CEU][hapmap]
rs1901172	1.00[EUR][1000 genomes]
rs2044808	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2044809	0.94[YRI][hapmap]
rs2323104	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2323105	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2323106	1.00[EUR][1000 genomes]
rs28379124	0.86[AMR][1000 genomes]
rs28445349	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28459770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28679434	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28700070	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2874959	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2874960	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28762443	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28767794	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28808427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28847579	0.93[AMR][1000 genomes]
rs28850718	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28860508	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28871730	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41423649	1.00[CEU][hapmap]
rs4469067	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4624641	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs55819721	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56329622	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56340547	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57244827	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57329498	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57893621	0.93[AFR][1000 genomes]
rs58359333	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58370602	0.96[AFR][1000 genomes]
rs59093225	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59388227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59714893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60071903	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61456402	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61708925	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827460	1.00[CEU][hapmap]
rs6828953	1.00[CEU][hapmap]
rs6833077	1.00[CEU][hapmap]
rs6836396	1.00[CEU][hapmap]
rs73102032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73102038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73102043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73119544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73119545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73800722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73800726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73800727	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7654248	1.00[EUR][1000 genomes]
rs7656898	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7664829	1.00[CEU][hapmap]
rs7669417	1.00[CEU][hapmap]
rs7674414	1.00[CEU][hapmap]
rs7679766	1.00[CEU][hapmap]
rs7683672	1.00[CEU][hapmap]
rs7695521	1.00[EUR][1000 genomes]
rs7695914	1.00[CEU][hapmap]
rs7697378	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7697406	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7697653	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7700168	1.00[EUR][1000 genomes]
rs896120	1.00[CEU][hapmap]
rs9999185	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv980440	chr4:21765590-21771393	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21766000-21771000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:21766400-21770000	Weak transcription	HMEC	breast
3	chr4:21766600-21780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:21767800-21769000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr4:21767800-21769000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:21768000-21770000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:21768600-21769000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:21768800-21769000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:21768800-21769200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:21768800-21769200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:21768800-21769800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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