Variant report

Variant	rs1901172
Chromosome Location	chr4:21756747-21756748
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21755284..21757367-chr4:21761747..21763856,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10002190	0.85[AMR][1000 genomes]
rs10002260	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10004616	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10004658	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10006346	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028615	1.00[AMR][1000 genomes]
rs10029020	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11936379	1.00[EUR][1000 genomes]
rs11944423	1.00[EUR][1000 genomes]
rs1471220	1.00[EUR][1000 genomes]
rs1503980	1.00[AMR][1000 genomes]
rs1503981	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871729	1.00[AMR][1000 genomes]
rs16871771	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871810	0.85[AMR][1000 genomes]
rs16871821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871823	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871877	0.81[AFR][1000 genomes]
rs16871879	1.00[EUR][1000 genomes]
rs16871882	1.00[EUR][1000 genomes]
rs16871885	1.00[EUR][1000 genomes]
rs16871890	1.00[EUR][1000 genomes]
rs16871892	1.00[EUR][1000 genomes]
rs2044808	1.00[EUR][1000 genomes]
rs2323074	0.85[AMR][1000 genomes]
rs2323104	1.00[EUR][1000 genomes]
rs2323105	1.00[EUR][1000 genomes]
rs2323106	1.00[EUR][1000 genomes]
rs28360924	0.85[AMR][1000 genomes]
rs28378411	0.84[AFR][1000 genomes]
rs28399840	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445349	1.00[EUR][1000 genomes]
rs28455666	0.85[AMR][1000 genomes]
rs28459770	1.00[EUR][1000 genomes]
rs28513676	0.85[AMR][1000 genomes]
rs28662772	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28679434	1.00[EUR][1000 genomes]
rs28700070	1.00[EUR][1000 genomes]
rs2874959	1.00[EUR][1000 genomes]
rs2874960	1.00[EUR][1000 genomes]
rs28762443	1.00[EUR][1000 genomes]
rs28767794	1.00[EUR][1000 genomes]
rs28808427	1.00[EUR][1000 genomes]
rs28850718	1.00[EUR][1000 genomes]
rs28860508	1.00[EUR][1000 genomes]
rs28871730	1.00[EUR][1000 genomes]
rs4101628	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4101630	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4469067	1.00[EUR][1000 genomes]
rs4624641	1.00[EUR][1000 genomes]
rs55819721	1.00[EUR][1000 genomes]
rs56329622	1.00[EUR][1000 genomes]
rs56340547	1.00[EUR][1000 genomes]
rs57244827	1.00[EUR][1000 genomes]
rs57298063	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57329498	1.00[EUR][1000 genomes]
rs58359333	1.00[EUR][1000 genomes]
rs59093225	1.00[EUR][1000 genomes]
rs59247815	0.84[AFR][1000 genomes]
rs59388227	1.00[EUR][1000 genomes]
rs59714893	1.00[EUR][1000 genomes]
rs60071903	1.00[EUR][1000 genomes]
rs61456402	1.00[EUR][1000 genomes]
rs6821199	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6840933	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102032	1.00[EUR][1000 genomes]
rs73102038	1.00[EUR][1000 genomes]
rs73102043	1.00[EUR][1000 genomes]
rs73119544	1.00[EUR][1000 genomes]
rs73119545	1.00[EUR][1000 genomes]
rs73800722	1.00[EUR][1000 genomes]
rs73800726	1.00[EUR][1000 genomes]
rs7654248	1.00[EUR][1000 genomes]
rs7656898	1.00[EUR][1000 genomes]
rs7688144	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7689554	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7695521	1.00[EUR][1000 genomes]
rs7697406	1.00[EUR][1000 genomes]
rs7697653	1.00[EUR][1000 genomes]
rs7700168	1.00[EUR][1000 genomes]
rs9784415	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21752200-21764600	Weak transcription	HMEC	breast
2	chr4:21755400-21764000	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:21755600-21757000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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