Variant report

Variant	rs28360924
Chromosome Location	chr4:21713311-21713312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10002260	0.85[AMR][1000 genomes]
rs10004658	0.85[AMR][1000 genomes]
rs10006346	0.85[AMR][1000 genomes]
rs10028615	0.85[AMR][1000 genomes]
rs10029020	0.85[AMR][1000 genomes]
rs1503980	0.85[AMR][1000 genomes]
rs1503981	0.85[AMR][1000 genomes]
rs16871729	0.85[AMR][1000 genomes]
rs16871771	0.85[AMR][1000 genomes]
rs16871791	0.83[AMR][1000 genomes]
rs16871810	1.00[AMR][1000 genomes]
rs16871821	0.85[AMR][1000 genomes]
rs16871823	0.85[AMR][1000 genomes]
rs1901172	0.85[AMR][1000 genomes]
rs2323074	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28399840	0.85[AMR][1000 genomes]
rs28455666	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28513676	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28662772	0.85[AMR][1000 genomes]
rs4101628	0.85[AMR][1000 genomes]
rs4101630	0.85[AMR][1000 genomes]
rs57298063	0.85[AMR][1000 genomes]
rs6821199	0.85[AMR][1000 genomes]
rs6840933	0.85[AMR][1000 genomes]
rs7688144	0.85[AMR][1000 genomes]
rs7689554	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21712400-21717400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:21712400-21718400	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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