Variant report
| Variant | rs2323074 |
|---|---|
| Chromosome Location | chr4:21703146-21703147 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10002260 | 0.85[AMR][1000 genomes] |
| rs10004658 | 0.85[AMR][1000 genomes] |
| rs10006346 | 0.85[AMR][1000 genomes] |
| rs10028615 | 0.85[AMR][1000 genomes] |
| rs10029020 | 0.85[AMR][1000 genomes] |
| rs1503980 | 0.85[AMR][1000 genomes] |
| rs1503981 | 0.85[AMR][1000 genomes] |
| rs16871729 | 0.85[AMR][1000 genomes] |
| rs16871771 | 0.85[AMR][1000 genomes] |
| rs16871791 | 0.83[AMR][1000 genomes] |
| rs16871810 | 1.00[AMR][1000 genomes] |
| rs16871821 | 0.85[AMR][1000 genomes] |
| rs16871823 | 0.85[AMR][1000 genomes] |
| rs1901172 | 0.85[AMR][1000 genomes] |
| rs28360924 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28399840 | 0.85[AMR][1000 genomes] |
| rs28455666 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28513676 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28662772 | 0.85[AMR][1000 genomes] |
| rs4101628 | 0.85[AMR][1000 genomes] |
| rs4101630 | 0.85[AMR][1000 genomes] |
| rs57298063 | 0.85[AMR][1000 genomes] |
| rs6821199 | 0.85[AMR][1000 genomes] |
| rs6840933 | 0.85[AMR][1000 genomes] |
| rs7688144 | 0.85[AMR][1000 genomes] |
| rs7689554 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:21699600-21708400 | Weak transcription | Brain Anterior Caudate | brain |
