Variant report

Variant	rs4101630
Chromosome Location	chr4:21727490-21727491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10002190	0.85[AMR][1000 genomes]
rs10002260	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10004616	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10004658	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10006346	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028615	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029020	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1503980	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1503981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871729	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871771	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871810	0.85[AMR][1000 genomes]
rs16871821	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871823	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871877	0.81[AFR][1000 genomes]
rs16871884	0.80[AFR][1000 genomes]
rs1901172	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2323074	0.85[AMR][1000 genomes]
rs28360924	0.85[AMR][1000 genomes]
rs28378411	0.85[AFR][1000 genomes]
rs28399840	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28455666	0.85[AMR][1000 genomes]
rs28513676	0.85[AMR][1000 genomes]
rs28662772	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4101628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57298063	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59247815	0.85[AFR][1000 genomes]
rs6821199	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6840933	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7688144	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7689554	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21724000-21727800	Weak transcription	Fetal Heart	heart
2	chr4:21727200-21728200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:21727200-21729400	Weak transcription	Fetal Brain Male	brain

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