Variant report

Variant	rs16871877
Chromosome Location	chr4:21768438-21768439
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21765094..21766763-chr4:21768387..21770633,2	K562	blood:
2	chr4:21513432..21514751-chr4:21767040..21768803,10	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10002190	1.00[EUR][1000 genomes]
rs10002260	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10004658	1.00[EUR][1000 genomes]
rs10006346	1.00[EUR][1000 genomes]
rs10028615	0.80[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs10029020	1.00[EUR][1000 genomes]
rs10034459	1.00[EUR][1000 genomes]
rs1034501	1.00[EUR][1000 genomes]
rs1034502	1.00[EUR][1000 genomes]
rs1158455	1.00[EUR][1000 genomes]
rs11731835	0.89[YRI][hapmap]
rs13102999	1.00[EUR][1000 genomes]
rs1398831	1.00[EUR][1000 genomes]
rs1503980	0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs1503981	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs1543101	1.00[EUR][1000 genomes]
rs1588709	1.00[EUR][1000 genomes]
rs16871503	1.00[EUR][1000 genomes]
rs16871729	1.00[EUR][1000 genomes]
rs16871771	0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16871794	1.00[EUR][1000 genomes]
rs16871797	1.00[EUR][1000 genomes]
rs16871821	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16871823	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16871835	1.00[EUR][1000 genomes]
rs16871838	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16871884	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs187237	1.00[EUR][1000 genomes]
rs1877612	1.00[EUR][1000 genomes]
rs1901172	0.81[AFR][1000 genomes]
rs2044806	1.00[EUR][1000 genomes]
rs2137651	1.00[EUR][1000 genomes]
rs28377254	1.00[EUR][1000 genomes]
rs28378411	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28379124	1.00[EUR][1000 genomes]
rs28399840	1.00[EUR][1000 genomes]
rs28456170	1.00[EUR][1000 genomes]
rs28463803	1.00[EUR][1000 genomes]
rs28560247	1.00[EUR][1000 genomes]
rs28578090	1.00[EUR][1000 genomes]
rs28662772	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28779778	0.85[AMR][1000 genomes]
rs360689	1.00[EUR][1000 genomes]
rs360699	1.00[EUR][1000 genomes]
rs4101628	0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs4101630	0.81[AFR][1000 genomes]
rs4235292	1.00[EUR][1000 genomes]
rs4289435	1.00[EUR][1000 genomes]
rs4438750	1.00[EUR][1000 genomes]
rs4696983	1.00[EUR][1000 genomes]
rs4696990	1.00[EUR][1000 genomes]
rs4697239	1.00[EUR][1000 genomes]
rs4697240	1.00[EUR][1000 genomes]
rs4697242	1.00[EUR][1000 genomes]
rs4697245	1.00[EUR][1000 genomes]
rs55820441	1.00[EUR][1000 genomes]
rs55906210	1.00[EUR][1000 genomes]
rs57298063	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58744364	1.00[EUR][1000 genomes]
rs59037882	1.00[EUR][1000 genomes]
rs59247815	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448090	1.00[EUR][1000 genomes]
rs6810989	1.00[EUR][1000 genomes]
rs6814288	1.00[EUR][1000 genomes]
rs6819373	1.00[EUR][1000 genomes]
rs6821199	0.86[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6825430	1.00[EUR][1000 genomes]
rs6835916	1.00[EUR][1000 genomes]
rs6836067	1.00[EUR][1000 genomes]
rs6836263	1.00[EUR][1000 genomes]
rs6836739	1.00[EUR][1000 genomes]
rs6840933	1.00[EUR][1000 genomes]
rs7438259	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7655030	1.00[EUR][1000 genomes]
rs7656388	1.00[EUR][1000 genomes]
rs7662861	1.00[EUR][1000 genomes]
rs7666663	1.00[EUR][1000 genomes]
rs7671356	1.00[EUR][1000 genomes]
rs7671527	1.00[EUR][1000 genomes]
rs7672938	1.00[EUR][1000 genomes]
rs7683672	1.00[EUR][1000 genomes]
rs7688144	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7689554	0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs907788	1.00[EUR][1000 genomes]
rs907789	1.00[EUR][1000 genomes]
rs971878	1.00[EUR][1000 genomes]
rs9784415	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9991631	1.00[EUR][1000 genomes]
rs9996615	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv980440	chr4:21765590-21771393	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21766000-21771000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:21766400-21770000	Weak transcription	HMEC	breast
3	chr4:21766600-21780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:21767600-21768800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:21767600-21768800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:21767800-21768800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:21767800-21768800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:21767800-21769000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:21767800-21769000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:21768000-21770000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:21768400-21768600	Weak transcription	H1 Cell Line	embryonic stem cell

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