Variant report

Variant	rs6825430
Chromosome Location	chr4:21597320-21597321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10002190	1.00[EUR][1000 genomes]
rs10002260	1.00[EUR][1000 genomes]
rs10004658	1.00[EUR][1000 genomes]
rs10006346	1.00[EUR][1000 genomes]
rs10028615	1.00[EUR][1000 genomes]
rs10029020	1.00[EUR][1000 genomes]
rs10034459	1.00[EUR][1000 genomes]
rs1034501	1.00[EUR][1000 genomes]
rs1034502	1.00[EUR][1000 genomes]
rs1503980	1.00[EUR][1000 genomes]
rs1503981	1.00[EUR][1000 genomes]
rs16871483	1.00[EUR][1000 genomes]
rs16871486	1.00[EUR][1000 genomes]
rs16871503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871505	0.93[AFR][1000 genomes]
rs16871508	0.89[AFR][1000 genomes]
rs16871511	0.93[AFR][1000 genomes]
rs16871514	0.93[AFR][1000 genomes]
rs16871729	1.00[EUR][1000 genomes]
rs16871771	1.00[EUR][1000 genomes]
rs16871794	1.00[EUR][1000 genomes]
rs16871797	1.00[EUR][1000 genomes]
rs16871821	1.00[EUR][1000 genomes]
rs16871823	1.00[EUR][1000 genomes]
rs16871835	1.00[EUR][1000 genomes]
rs16871838	1.00[EUR][1000 genomes]
rs16871877	1.00[EUR][1000 genomes]
rs16871884	1.00[EUR][1000 genomes]
rs1841374	1.00[EUR][1000 genomes]
rs2044806	1.00[EUR][1000 genomes]
rs28377254	1.00[EUR][1000 genomes]
rs28378411	1.00[EUR][1000 genomes]
rs28379124	1.00[EUR][1000 genomes]
rs28399840	1.00[EUR][1000 genomes]
rs28456170	1.00[EUR][1000 genomes]
rs28463803	1.00[EUR][1000 genomes]
rs28560247	1.00[EUR][1000 genomes]
rs28578090	1.00[EUR][1000 genomes]
rs28662772	1.00[EUR][1000 genomes]
rs4101628	1.00[EUR][1000 genomes]
rs55820441	1.00[EUR][1000 genomes]
rs55906210	1.00[EUR][1000 genomes]
rs57298063	1.00[EUR][1000 genomes]
rs58744364	1.00[EUR][1000 genomes]
rs59037882	1.00[EUR][1000 genomes]
rs59247815	1.00[EUR][1000 genomes]
rs6810989	1.00[EUR][1000 genomes]
rs6814288	1.00[EUR][1000 genomes]
rs6821199	1.00[EUR][1000 genomes]
rs6824316	0.89[AFR][1000 genomes]
rs6824702	0.93[AFR][1000 genomes]
rs6824711	0.85[AFR][1000 genomes]
rs6835916	1.00[EUR][1000 genomes]
rs6836263	1.00[EUR][1000 genomes]
rs6836739	1.00[EUR][1000 genomes]
rs6840933	1.00[EUR][1000 genomes]
rs73252290	0.83[AFR][1000 genomes]
rs73254304	0.93[AFR][1000 genomes]
rs73254305	0.93[AFR][1000 genomes]
rs73254306	0.93[AFR][1000 genomes]
rs73254310	0.93[AFR][1000 genomes]
rs7438259	1.00[EUR][1000 genomes]
rs7655030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7657287	0.83[AFR][1000 genomes]
rs7672938	1.00[EUR][1000 genomes]
rs7679874	0.93[AFR][1000 genomes]
rs7681243	0.81[AFR][1000 genomes]
rs7681823	0.83[AFR][1000 genomes]
rs7688144	1.00[EUR][1000 genomes]
rs7689554	1.00[EUR][1000 genomes]
rs9784415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1008716	chr4:21580423-21633636	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
8	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21593800-21597600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:21594200-21597400	Weak transcription	Brain Angular Gyrus	brain
3	chr4:21594200-21598400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:21595200-21597400	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:21597200-21597800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:21597200-21597800	Enhancers	Colon Smooth Muscle	Colon
7	chr4:21597200-21598000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:21597200-21598000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:21597200-21598800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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