Variant report

Variant	rs28379124
Chromosome Location	chr4:21724650-21724651
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10002190	1.00[EUR][1000 genomes]
rs10002260	1.00[EUR][1000 genomes]
rs10004658	1.00[EUR][1000 genomes]
rs10006346	1.00[EUR][1000 genomes]
rs10028615	1.00[EUR][1000 genomes]
rs10029020	1.00[EUR][1000 genomes]
rs10034459	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1034501	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1034502	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1158455	1.00[EUR][1000 genomes]
rs11936379	0.86[AMR][1000 genomes]
rs11944423	0.86[AMR][1000 genomes]
rs13102999	1.00[EUR][1000 genomes]
rs1398831	1.00[EUR][1000 genomes]
rs1503980	1.00[EUR][1000 genomes]
rs1503981	1.00[EUR][1000 genomes]
rs1543101	1.00[EUR][1000 genomes]
rs1588709	1.00[EUR][1000 genomes]
rs16871483	1.00[EUR][1000 genomes]
rs16871486	1.00[EUR][1000 genomes]
rs16871503	1.00[EUR][1000 genomes]
rs16871729	1.00[EUR][1000 genomes]
rs16871771	1.00[EUR][1000 genomes]
rs16871794	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871797	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871821	1.00[EUR][1000 genomes]
rs16871823	1.00[EUR][1000 genomes]
rs16871835	1.00[EUR][1000 genomes]
rs16871838	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871877	1.00[EUR][1000 genomes]
rs16871879	0.86[AMR][1000 genomes]
rs16871882	0.86[AMR][1000 genomes]
rs16871884	1.00[EUR][1000 genomes]
rs16871885	0.86[AMR][1000 genomes]
rs16871890	0.86[AMR][1000 genomes]
rs16871892	0.86[AMR][1000 genomes]
rs1841374	1.00[EUR][1000 genomes]
rs187237	1.00[EUR][1000 genomes]
rs2044806	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2044808	0.86[AMR][1000 genomes]
rs2137651	1.00[EUR][1000 genomes]
rs2323104	0.86[AMR][1000 genomes]
rs2323105	0.86[AMR][1000 genomes]
rs28377254	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28378411	1.00[EUR][1000 genomes]
rs28399840	1.00[EUR][1000 genomes]
rs28445349	0.86[AMR][1000 genomes]
rs28456170	1.00[EUR][1000 genomes]
rs28459770	0.86[AMR][1000 genomes]
rs28463803	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28560247	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28578090	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28662772	1.00[EUR][1000 genomes]
rs28679434	0.86[AMR][1000 genomes]
rs28700070	0.86[AMR][1000 genomes]
rs2874959	0.86[AMR][1000 genomes]
rs2874960	0.86[AMR][1000 genomes]
rs28762443	0.86[AMR][1000 genomes]
rs28767794	0.86[AMR][1000 genomes]
rs28808427	0.86[AMR][1000 genomes]
rs28850718	0.86[AMR][1000 genomes]
rs28860508	0.86[AMR][1000 genomes]
rs28871730	0.86[AMR][1000 genomes]
rs360689	1.00[EUR][1000 genomes]
rs360699	1.00[EUR][1000 genomes]
rs4101628	1.00[EUR][1000 genomes]
rs4235292	1.00[EUR][1000 genomes]
rs4289435	1.00[EUR][1000 genomes]
rs4438750	1.00[EUR][1000 genomes]
rs4469067	0.86[AMR][1000 genomes]
rs4696983	1.00[EUR][1000 genomes]
rs4696990	1.00[EUR][1000 genomes]
rs4697239	1.00[EUR][1000 genomes]
rs4697240	1.00[EUR][1000 genomes]
rs4697242	1.00[EUR][1000 genomes]
rs4697245	1.00[EUR][1000 genomes]
rs55819721	0.86[AMR][1000 genomes]
rs55820441	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55906210	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56329622	0.86[AMR][1000 genomes]
rs56340547	0.86[AMR][1000 genomes]
rs57244827	0.86[AMR][1000 genomes]
rs57298063	1.00[EUR][1000 genomes]
rs57329498	0.86[AMR][1000 genomes]
rs58359333	0.86[AMR][1000 genomes]
rs58744364	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59037882	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59093225	0.86[AMR][1000 genomes]
rs59247815	1.00[EUR][1000 genomes]
rs59388227	0.86[AMR][1000 genomes]
rs59714893	0.86[AMR][1000 genomes]
rs60071903	0.86[AMR][1000 genomes]
rs61456402	0.86[AMR][1000 genomes]
rs61708925	0.86[AMR][1000 genomes]
rs6448090	1.00[EUR][1000 genomes]
rs6810989	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6814288	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6819373	1.00[EUR][1000 genomes]
rs6821199	1.00[EUR][1000 genomes]
rs6825430	1.00[EUR][1000 genomes]
rs6835916	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6836067	1.00[EUR][1000 genomes]
rs6836263	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6836739	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6840933	1.00[EUR][1000 genomes]
rs73102032	0.86[AMR][1000 genomes]
rs73102038	0.86[AMR][1000 genomes]
rs73102043	0.86[AMR][1000 genomes]
rs73119544	0.86[AMR][1000 genomes]
rs73119545	0.86[AMR][1000 genomes]
rs73800722	0.86[AMR][1000 genomes]
rs73800726	0.86[AMR][1000 genomes]
rs73800727	0.86[AMR][1000 genomes]
rs7438259	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7655030	1.00[EUR][1000 genomes]
rs7656388	1.00[EUR][1000 genomes]
rs7656898	0.86[AMR][1000 genomes]
rs7662861	1.00[EUR][1000 genomes]
rs7666663	1.00[EUR][1000 genomes]
rs7671356	1.00[EUR][1000 genomes]
rs7671527	1.00[EUR][1000 genomes]
rs7672938	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7683672	1.00[EUR][1000 genomes]
rs7688144	1.00[EUR][1000 genomes]
rs7689554	1.00[EUR][1000 genomes]
rs7697378	0.86[AMR][1000 genomes]
rs7697653	0.86[AMR][1000 genomes]
rs907788	1.00[EUR][1000 genomes]
rs971878	1.00[EUR][1000 genomes]
rs9784415	1.00[EUR][1000 genomes]
rs9991631	1.00[EUR][1000 genomes]
rs9996615	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21724000-21727800	Weak transcription	Fetal Heart	heart
2	chr4:21724200-21726800	Weak transcription	Fetal Brain Male	brain
3	chr4:21724600-21726200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links