Variant report

Variant	rs1398831
Chromosome Location	chr4:21846003-21846004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR125-2	chr4:21844963-21854811	UM9-5
2	lnc-GPR125-2	chr4:21844964-21854811	NONHSAT095745

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10002190	1.00[EUR][1000 genomes]
rs10002260	1.00[EUR][1000 genomes]
rs10004658	1.00[EUR][1000 genomes]
rs10006346	1.00[EUR][1000 genomes]
rs10028615	1.00[EUR][1000 genomes]
rs10029020	1.00[EUR][1000 genomes]
rs10034459	1.00[EUR][1000 genomes]
rs1034501	1.00[EUR][1000 genomes]
rs1034502	1.00[EUR][1000 genomes]
rs1158455	1.00[EUR][1000 genomes]
rs13102999	1.00[EUR][1000 genomes]
rs13117670	1.00[EUR][1000 genomes]
rs13128557	1.00[AMR][1000 genomes]
rs1503980	1.00[EUR][1000 genomes]
rs1503981	1.00[EUR][1000 genomes]
rs1543101	1.00[EUR][1000 genomes]
rs1588709	1.00[EUR][1000 genomes]
rs16871729	1.00[EUR][1000 genomes]
rs16871771	1.00[EUR][1000 genomes]
rs16871794	1.00[EUR][1000 genomes]
rs16871797	1.00[EUR][1000 genomes]
rs16871821	1.00[EUR][1000 genomes]
rs16871823	1.00[EUR][1000 genomes]
rs16871835	1.00[EUR][1000 genomes]
rs16871838	1.00[EUR][1000 genomes]
rs16871877	1.00[EUR][1000 genomes]
rs16871884	1.00[EUR][1000 genomes]
rs187237	1.00[EUR][1000 genomes]
rs1877612	1.00[EUR][1000 genomes]
rs2044806	1.00[EUR][1000 genomes]
rs2137651	1.00[EUR][1000 genomes]
rs28377254	1.00[EUR][1000 genomes]
rs28378411	1.00[EUR][1000 genomes]
rs28379124	1.00[EUR][1000 genomes]
rs28399840	1.00[EUR][1000 genomes]
rs28456170	1.00[EUR][1000 genomes]
rs28463803	1.00[EUR][1000 genomes]
rs28560247	1.00[EUR][1000 genomes]
rs28578090	1.00[EUR][1000 genomes]
rs28662772	1.00[EUR][1000 genomes]
rs360689	1.00[EUR][1000 genomes]
rs360699	1.00[EUR][1000 genomes]
rs4101628	1.00[EUR][1000 genomes]
rs4235292	1.00[EUR][1000 genomes]
rs4289435	1.00[EUR][1000 genomes]
rs4438750	1.00[EUR][1000 genomes]
rs4696983	1.00[EUR][1000 genomes]
rs4696990	1.00[EUR][1000 genomes]
rs4697239	1.00[EUR][1000 genomes]
rs4697240	1.00[EUR][1000 genomes]
rs4697242	1.00[EUR][1000 genomes]
rs4697245	1.00[EUR][1000 genomes]
rs55820441	1.00[EUR][1000 genomes]
rs55906210	1.00[EUR][1000 genomes]
rs57298063	1.00[EUR][1000 genomes]
rs58744364	1.00[EUR][1000 genomes]
rs59037882	1.00[EUR][1000 genomes]
rs59247815	1.00[EUR][1000 genomes]
rs6448090	1.00[EUR][1000 genomes]
rs6810989	1.00[EUR][1000 genomes]
rs6814288	1.00[EUR][1000 genomes]
rs6819373	1.00[EUR][1000 genomes]
rs6821199	1.00[EUR][1000 genomes]
rs6835916	1.00[EUR][1000 genomes]
rs6836067	1.00[EUR][1000 genomes]
rs6836263	1.00[EUR][1000 genomes]
rs6836739	1.00[EUR][1000 genomes]
rs6840933	1.00[EUR][1000 genomes]
rs7438259	1.00[EUR][1000 genomes]
rs7656388	1.00[EUR][1000 genomes]
rs7662861	1.00[EUR][1000 genomes]
rs7666663	1.00[EUR][1000 genomes]
rs7671356	1.00[EUR][1000 genomes]
rs7671527	1.00[EUR][1000 genomes]
rs7672938	1.00[EUR][1000 genomes]
rs7683672	1.00[EUR][1000 genomes]
rs7688144	1.00[EUR][1000 genomes]
rs7689554	1.00[EUR][1000 genomes]
rs7697044	1.00[AMR][1000 genomes]
rs907788	1.00[EUR][1000 genomes]
rs907789	1.00[EUR][1000 genomes]
rs971878	1.00[EUR][1000 genomes]
rs9784415	1.00[EUR][1000 genomes]
rs9991631	1.00[EUR][1000 genomes]
rs9996615	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21840800-21849600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:21846000-21847200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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