Variant report

Variant	rs907789
Chromosome Location	chr4:21903799-21903800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10002190	1.00[EUR][1000 genomes]
rs10002260	1.00[EUR][1000 genomes]
rs10004658	1.00[EUR][1000 genomes]
rs10006346	1.00[EUR][1000 genomes]
rs10028615	1.00[EUR][1000 genomes]
rs10034459	1.00[EUR][1000 genomes]
rs1034501	1.00[EUR][1000 genomes]
rs1034502	1.00[EUR][1000 genomes]
rs1040038	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1158455	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13102999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13117670	1.00[EUR][1000 genomes]
rs1398831	1.00[EUR][1000 genomes]
rs1503980	1.00[EUR][1000 genomes]
rs1503981	1.00[EUR][1000 genomes]
rs1543101	1.00[EUR][1000 genomes]
rs1588709	1.00[EUR][1000 genomes]
rs16871771	1.00[EUR][1000 genomes]
rs16871794	1.00[EUR][1000 genomes]
rs16871797	1.00[EUR][1000 genomes]
rs16871821	1.00[EUR][1000 genomes]
rs16871823	1.00[EUR][1000 genomes]
rs16871835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871838	1.00[EUR][1000 genomes]
rs16871877	1.00[EUR][1000 genomes]
rs16871884	1.00[EUR][1000 genomes]
rs181718	0.82[YRI][hapmap]
rs187237	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1877612	1.00[EUR][1000 genomes]
rs2044806	1.00[EUR][1000 genomes]
rs2137651	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28377254	1.00[EUR][1000 genomes]
rs28378411	1.00[EUR][1000 genomes]
rs28399840	1.00[EUR][1000 genomes]
rs28456170	1.00[EUR][1000 genomes]
rs28463803	1.00[EUR][1000 genomes]
rs28560247	1.00[EUR][1000 genomes]
rs28578090	1.00[EUR][1000 genomes]
rs28662772	1.00[EUR][1000 genomes]
rs360689	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs360699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4101628	1.00[EUR][1000 genomes]
rs4235292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4289435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4438750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4696983	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4696987	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4696990	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4697239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4697240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4697242	1.00[EUR][1000 genomes]
rs4697245	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55820441	1.00[EUR][1000 genomes]
rs55906210	1.00[EUR][1000 genomes]
rs58744364	1.00[EUR][1000 genomes]
rs59037882	1.00[EUR][1000 genomes]
rs59247815	1.00[EUR][1000 genomes]
rs6448090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6810989	1.00[EUR][1000 genomes]
rs6814288	1.00[EUR][1000 genomes]
rs6819373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6821199	1.00[EUR][1000 genomes]
rs6835916	1.00[EUR][1000 genomes]
rs6836067	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6836263	1.00[EUR][1000 genomes]
rs6836739	1.00[EUR][1000 genomes]
rs6840933	1.00[EUR][1000 genomes]
rs7438259	1.00[EUR][1000 genomes]
rs7440879	1.00[YRI][hapmap]
rs7442181	1.00[AMR][1000 genomes]
rs7656388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7662861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7666663	1.00[EUR][1000 genomes]
rs7671356	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs7671527	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7672938	1.00[EUR][1000 genomes]
rs7683672	1.00[EUR][1000 genomes]
rs7688144	1.00[EUR][1000 genomes]
rs7689554	1.00[EUR][1000 genomes]
rs907788	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs971878	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9784415	1.00[EUR][1000 genomes]
rs9991631	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9996615	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv987707	chr4:21900601-21908051	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21902000-21904000	Enhancers	NHEK	skin
2	chr4:21902000-21904200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:21902000-21904400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:21903000-21904000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:21903000-21904200	Enhancers	HSMM	muscle
6	chr4:21903000-21904400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:21903400-21903800	Weak transcription	HMEC	breast
8	chr4:21903400-21903800	Enhancers	NH-A	brain

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