Variant report

Variant	rs1040038
Chromosome Location	chr4:21856629-21856630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10938862	0.81[AFR][1000 genomes]
rs1158455	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13102999	1.00[AMR][1000 genomes]
rs16871835	1.00[AMR][1000 genomes]
rs181718	0.80[YRI][hapmap]
rs187237	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2137651	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs360689	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs360699	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4235292	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4289435	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4438750	1.00[AMR][1000 genomes]
rs4696983	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4696987	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4696990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4697239	1.00[AMR][1000 genomes]
rs4697240	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4697245	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6448090	1.00[AMR][1000 genomes]
rs6819373	1.00[AMR][1000 genomes]
rs6836067	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7440879	1.00[YRI][hapmap]
rs7442181	1.00[AMR][1000 genomes]
rs7656388	1.00[AMR][1000 genomes]
rs7662861	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7671356	0.82[YRI][hapmap]
rs7671527	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs907788	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs907789	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs971878	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9991631	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9996615	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21854000-21859600	Weak transcription	Ovary	ovary

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