Variant report

Variant	rs7662861
Chromosome Location	chr4:21891925-21891926
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10002190	1.00[EUR][1000 genomes]
rs10002260	1.00[EUR][1000 genomes]
rs10004658	1.00[EUR][1000 genomes]
rs10006346	1.00[EUR][1000 genomes]
rs10028615	1.00[EUR][1000 genomes]
rs10029020	1.00[EUR][1000 genomes]
rs10034459	1.00[EUR][1000 genomes]
rs1034501	1.00[EUR][1000 genomes]
rs1034502	1.00[EUR][1000 genomes]
rs1040038	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1158455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13102999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13117670	1.00[EUR][1000 genomes]
rs1398831	1.00[EUR][1000 genomes]
rs1503980	1.00[EUR][1000 genomes]
rs1503981	1.00[EUR][1000 genomes]
rs1543101	1.00[EUR][1000 genomes]
rs1588709	1.00[EUR][1000 genomes]
rs16871729	1.00[EUR][1000 genomes]
rs16871771	1.00[EUR][1000 genomes]
rs16871794	1.00[EUR][1000 genomes]
rs16871797	1.00[EUR][1000 genomes]
rs16871821	1.00[EUR][1000 genomes]
rs16871823	1.00[EUR][1000 genomes]
rs16871835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871838	1.00[EUR][1000 genomes]
rs16871877	1.00[EUR][1000 genomes]
rs16871884	1.00[EUR][1000 genomes]
rs187237	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1877612	1.00[EUR][1000 genomes]
rs2044806	1.00[EUR][1000 genomes]
rs2137651	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28377254	1.00[EUR][1000 genomes]
rs28378411	1.00[EUR][1000 genomes]
rs28379124	1.00[EUR][1000 genomes]
rs28399840	1.00[EUR][1000 genomes]
rs28456170	1.00[EUR][1000 genomes]
rs28463803	1.00[EUR][1000 genomes]
rs28560247	1.00[EUR][1000 genomes]
rs28578090	1.00[EUR][1000 genomes]
rs28662772	1.00[EUR][1000 genomes]
rs360689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs360699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4101628	1.00[EUR][1000 genomes]
rs4235292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4289435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4438750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4696983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4696987	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4696990	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4697239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4697240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4697242	1.00[EUR][1000 genomes]
rs4697245	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55820441	1.00[EUR][1000 genomes]
rs55906210	1.00[EUR][1000 genomes]
rs57298063	1.00[EUR][1000 genomes]
rs58744364	1.00[EUR][1000 genomes]
rs59037882	1.00[EUR][1000 genomes]
rs59247815	1.00[EUR][1000 genomes]
rs6448090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6810989	1.00[EUR][1000 genomes]
rs6814288	1.00[EUR][1000 genomes]
rs6819373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6821199	1.00[EUR][1000 genomes]
rs6835916	1.00[EUR][1000 genomes]
rs6836067	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6836263	1.00[EUR][1000 genomes]
rs6836739	1.00[EUR][1000 genomes]
rs6840933	1.00[EUR][1000 genomes]
rs7438259	1.00[EUR][1000 genomes]
rs7442181	1.00[AMR][1000 genomes]
rs7656388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7666663	1.00[EUR][1000 genomes]
rs7671356	1.00[EUR][1000 genomes]
rs7671527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7672938	1.00[EUR][1000 genomes]
rs7683672	1.00[EUR][1000 genomes]
rs7688144	1.00[EUR][1000 genomes]
rs7689554	1.00[EUR][1000 genomes]
rs907788	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs907789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs971878	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9784415	1.00[EUR][1000 genomes]
rs9991631	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9996615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21890400-21893200	Weak transcription	Ovary	ovary
2	chr4:21890600-21894600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:21890600-21894800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:21891000-21892400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:21891200-21899600	Weak transcription	HMEC	breast
6	chr4:21891400-21894600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:21891600-21894400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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