Variant report
| Variant | rs1877612 |
|---|---|
| Chromosome Location | chr4:21954531-21954532 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ESRRA | chr4:21953999-21954725 | GM12878 | blood: | n/a | n/a |
| 2 | SPI1 | chr4:21954189-21954551 | GM12891 | blood: | n/a | n/a |
| 3 | SPI1 | chr4:21954157-21954552 | GM12878 | blood: | n/a | n/a |
| 4 | SPI1 | chr4:21954155-21954581 | HL-60 | blood: | n/a | n/a |
| 5 | SPI1 | chr4:21954143-21954532 | GM12891 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| KCNIP4 | TF binding region |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs1158455 | 1.00[EUR][1000 genomes] |
| rs13102999 | 1.00[EUR][1000 genomes] |
| rs13117670 | 1.00[EUR][1000 genomes] |
| rs1398831 | 1.00[EUR][1000 genomes] |
| rs1543101 | 1.00[EUR][1000 genomes] |
| rs1588709 | 1.00[EUR][1000 genomes] |
| rs16871877 | 1.00[EUR][1000 genomes] |
| rs16871884 | 1.00[EUR][1000 genomes] |
| rs187237 | 1.00[EUR][1000 genomes] |
| rs2137651 | 1.00[EUR][1000 genomes] |
| rs360689 | 1.00[EUR][1000 genomes] |
| rs360699 | 1.00[EUR][1000 genomes] |
| rs4235292 | 1.00[EUR][1000 genomes] |
| rs4289435 | 1.00[EUR][1000 genomes] |
| rs4438750 | 1.00[EUR][1000 genomes] |
| rs4696983 | 1.00[EUR][1000 genomes] |
| rs4696990 | 1.00[EUR][1000 genomes] |
| rs4697239 | 1.00[EUR][1000 genomes] |
| rs4697240 | 1.00[EUR][1000 genomes] |
| rs4697242 | 1.00[EUR][1000 genomes] |
| rs4697245 | 1.00[EUR][1000 genomes] |
| rs6448090 | 1.00[EUR][1000 genomes] |
| rs6819373 | 1.00[EUR][1000 genomes] |
| rs6836067 | 1.00[EUR][1000 genomes] |
| rs7656388 | 1.00[EUR][1000 genomes] |
| rs7662861 | 1.00[EUR][1000 genomes] |
| rs7666663 | 1.00[EUR][1000 genomes] |
| rs7671356 | 1.00[EUR][1000 genomes] |
| rs7671527 | 1.00[EUR][1000 genomes] |
| rs7683672 | 1.00[EUR][1000 genomes] |
| rs907788 | 1.00[EUR][1000 genomes] |
| rs907789 | 1.00[EUR][1000 genomes] |
| rs971878 | 1.00[EUR][1000 genomes] |
| rs9991631 | 1.00[EUR][1000 genomes] |
| rs9996615 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv2757924 | chr4:21873204-21980559 | Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2759231 | chr4:21873204-21980559 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv428440 | chr4:21873204-21980559 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:21951800-21955400 | Weak transcription | Ovary | ovary |
