Variant report

Variant	rs7683672
Chromosome Location	chr4:21888089-21888090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10002190	1.00[EUR][1000 genomes]
rs10002260	1.00[EUR][1000 genomes]
rs10002735	1.00[CEU][hapmap]
rs10004658	1.00[EUR][1000 genomes]
rs10006346	1.00[EUR][1000 genomes]
rs10013811	1.00[CEU][hapmap]
rs10025080	1.00[CEU][hapmap]
rs10028615	1.00[EUR][1000 genomes]
rs10029020	1.00[EUR][1000 genomes]
rs10034459	1.00[EUR][1000 genomes]
rs1034501	1.00[EUR][1000 genomes]
rs1034502	1.00[EUR][1000 genomes]
rs1158455	1.00[EUR][1000 genomes]
rs11934767	1.00[CEU][hapmap]
rs11936563	1.00[CEU][hapmap]
rs11939307	1.00[CEU][hapmap]
rs11943657	1.00[CEU][hapmap]
rs13102999	1.00[EUR][1000 genomes]
rs13117670	1.00[EUR][1000 genomes]
rs1398831	1.00[EUR][1000 genomes]
rs1471220	1.00[CEU][hapmap]
rs1503980	1.00[EUR][1000 genomes]
rs1503981	1.00[EUR][1000 genomes]
rs1513577	1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs1543101	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs1588709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871711	1.00[CEU][hapmap]
rs16871712	1.00[CEU][hapmap]
rs16871729	1.00[EUR][1000 genomes]
rs16871771	1.00[EUR][1000 genomes]
rs16871794	1.00[EUR][1000 genomes]
rs16871797	1.00[EUR][1000 genomes]
rs16871821	1.00[EUR][1000 genomes]
rs16871823	1.00[EUR][1000 genomes]
rs16871835	1.00[EUR][1000 genomes]
rs16871838	1.00[EUR][1000 genomes]
rs16871840	1.00[CEU][hapmap]
rs16871847	1.00[CEU][hapmap]
rs16871854	1.00[CEU][hapmap]
rs16871866	1.00[CEU][hapmap]
rs16871869	1.00[CEU][hapmap]
rs16871877	1.00[EUR][1000 genomes]
rs16871879	1.00[CEU][hapmap]
rs16871882	1.00[CEU][hapmap]
rs16871884	1.00[EUR][1000 genomes]
rs16871885	1.00[CEU][hapmap]
rs16871890	1.00[CEU][hapmap]
rs16871892	1.00[CEU][hapmap]
rs16871966	1.00[CEU][hapmap]
rs16872036	1.00[CEU][hapmap]
rs16872041	1.00[CEU][hapmap]
rs187237	1.00[EUR][1000 genomes]
rs1877612	1.00[EUR][1000 genomes]
rs2044806	1.00[EUR][1000 genomes]
rs2044808	1.00[CEU][hapmap]
rs2137651	1.00[EUR][1000 genomes]
rs28377254	1.00[EUR][1000 genomes]
rs28378411	1.00[EUR][1000 genomes]
rs28379124	1.00[EUR][1000 genomes]
rs28399840	1.00[EUR][1000 genomes]
rs28456170	1.00[EUR][1000 genomes]
rs28463803	1.00[EUR][1000 genomes]
rs28560247	1.00[EUR][1000 genomes]
rs28578090	1.00[EUR][1000 genomes]
rs28662772	1.00[EUR][1000 genomes]
rs360689	1.00[EUR][1000 genomes]
rs360699	1.00[EUR][1000 genomes]
rs4101628	1.00[EUR][1000 genomes]
rs41423649	1.00[CEU][hapmap]
rs4235292	1.00[EUR][1000 genomes]
rs4289435	1.00[EUR][1000 genomes]
rs4438750	1.00[EUR][1000 genomes]
rs4624641	1.00[CEU][hapmap]
rs4696983	1.00[EUR][1000 genomes]
rs4696990	1.00[EUR][1000 genomes]
rs4697239	1.00[EUR][1000 genomes]
rs4697240	1.00[EUR][1000 genomes]
rs4697242	1.00[EUR][1000 genomes]
rs4697245	1.00[EUR][1000 genomes]
rs55820441	1.00[EUR][1000 genomes]
rs55906210	1.00[EUR][1000 genomes]
rs57298063	1.00[EUR][1000 genomes]
rs58744364	1.00[EUR][1000 genomes]
rs59037882	1.00[EUR][1000 genomes]
rs59247815	1.00[EUR][1000 genomes]
rs6448090	1.00[EUR][1000 genomes]
rs6810989	1.00[EUR][1000 genomes]
rs6814288	1.00[EUR][1000 genomes]
rs6819373	1.00[EUR][1000 genomes]
rs6821199	1.00[EUR][1000 genomes]
rs6827460	1.00[CEU][hapmap]
rs6828953	1.00[CEU][hapmap]
rs6833077	1.00[CEU][hapmap]
rs6835916	1.00[EUR][1000 genomes]
rs6836067	1.00[EUR][1000 genomes]
rs6836263	1.00[EUR][1000 genomes]
rs6836396	1.00[CEU][hapmap]
rs6836739	1.00[EUR][1000 genomes]
rs6840933	1.00[EUR][1000 genomes]
rs7438259	1.00[EUR][1000 genomes]
rs7656388	1.00[EUR][1000 genomes]
rs7662861	1.00[EUR][1000 genomes]
rs7664829	1.00[CEU][hapmap]
rs7666663	1.00[EUR][1000 genomes]
rs7669417	1.00[CEU][hapmap]
rs7671356	1.00[EUR][1000 genomes]
rs7671527	1.00[EUR][1000 genomes]
rs7672938	1.00[EUR][1000 genomes]
rs7674414	1.00[CEU][hapmap]
rs7679766	1.00[CEU][hapmap]
rs7688144	1.00[EUR][1000 genomes]
rs7689554	1.00[EUR][1000 genomes]
rs7695914	1.00[CEU][hapmap]
rs896120	1.00[CEU][hapmap]
rs907788	1.00[EUR][1000 genomes]
rs907789	1.00[EUR][1000 genomes]
rs971878	1.00[EUR][1000 genomes]
rs9784415	1.00[EUR][1000 genomes]
rs9991631	1.00[EUR][1000 genomes]
rs9996615	1.00[EUR][1000 genomes]
rs9999185	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21884000-21888800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:21884600-21888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:21885200-21888800	Weak transcription	HMEC	breast
4	chr4:21886200-21891600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:21886600-21890200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:21887200-21890000	Enhancers	NH-A	brain
7	chr4:21887400-21889200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:21887600-21889600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:21887600-21890800	Enhancers	Osteobl	bone
10	chr4:21887800-21889200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:21888000-21889400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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